Evidence map›Paper›PMID 29208130›Full record

ArticleMicrobial genomics2017

Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation.

Fasahath Husain, Kevin Tang, Yaligara Veeranagouda, Renata Boente, Sheila Patrick, Garry Blakely, Hannah M Wexler

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

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  10. The Infant Gut CommensalFrontiers in cellular and infection microbiology · 2022
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  11. Review
  12. Genomic Background and Phylogeny ofAntibiotics (Basel, Switzerland) · 2021
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. CRISPR-Cas Systems inFrontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Fasahath Husain1​Brentwood Biomedical Research Institute, Los Angeles, CA, USA.
Kevin Tang2​UCLA, Los Angeles, CA, USA.
Yaligara Veeranagouda3​GLAVAHCS, Los Angeles, CA, USA.
Renata Boente3​GLAVAHCS, Los Angeles, CA, USA.
Sheila Patrick4​Queens University Belfast, Belfast, UK.
Garry Blakely5​University of Edinburgh, Edinburgh, UK.
Hannah M Wexler6​Research, GLAVAHCS, 11301 Wilshire Blvd., 691/151J Bldg. 115, Room 312, Los Angeles, CA, USA.
Brentwood Biomedical Research Institute · USQueen's University Belfast · GBUCLA Health · USUniversity of Edinburgh · GB

Funding

Metronidazole resistance in Bacteroides fragilis: an integrated approachR21AI109545 · NIAID · BRENTWOOD BIOMEDICAL RESEARCH INSTITUTE · PI WEXLER, HANNAH · 2014 to 2015
$338k
NIAID NIH HHS R21 AI109545
6 · The paper itself

Abstract

Bacteroides fragilis, an important component of the human gastrointestinal microbiota, can cause lethal extra-intestinal infection upon escape from the gastrointestinal tract. We demonstrated transfer and recombination of large chromosomal segments from B. fragilis HMW615, a multidrug resistant clinical isolate, to B. fragilis 638R. In one example, the transfer of a segment of ~435 Kb/356 genes replaced ~413 Kb/326 genes of the B. fragilis 638R chromosome. In addition to transfer of antibiotic resistance genes, these transfers (1) replaced complete divergent polysaccharide biosynthesis loci; (2) replaced DNA inversion-controlled intergenic shufflons (that control expression of genes encoding starch utilization system outer membrane proteins) with more complex, divergent shufflons; and (3) introduced additional intergenic shufflons encoding divergent Type 1 restriction/modification systems. Conjugative transposon-like genes within a transferred segment and within a putative integrative conjugative element (ICE5) ~45 kb downstream from the transferred segment both encode proteins that may be involved in the observed transfer. These data indicate that chromosomal transfer is a driver of antigenic diversity and nutrient adaptation in Bacteroides that (1) contributes to the dissemination of the extensive B. fragilis pan-genome, (2) allows rapid adaptation to a changing environment and (3) can confer pathogenic characteristics to host symbionts.

Indexed as

Adaptation, BiologicalAntigenic VariationBacteroides fragilisBacteroides InfectionsChromosomes, BacterialDNA Transposable ElementsGastrointestinal MicrobiomeGene Transfer, HorizontalHumansPolysaccharides, BacterialRecombination, GeneticDNA Transposable ElementsPolysaccharides, BacterialBacteroides fragilishorizontal transmissionpolysaccharide capsulesrestriction modification system

Identifiers

PMID29208130
PMCPMC5729914
OpenAlexW2768786280

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.