Evidence map›Paper›PMID 29207503›Full record

ArticleVaccines2017

Detection of Nuclear Protein Profile Changes by Human Metapneumovirus M2-2 Protein Using Quantitative Differential Proteomics.

Yuping Ren, Eunjin Choi, Ke Zhang, Yu Chen, Sha Ye, Xiaoling Deng, Kangling Zhang, Xiaoyong Bao

Open access · goldAbstract read
In one paragraph

Article in Vaccines, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yuping RenDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. ypren@tjh.tjmu.edu.cn.
Eunjin ChoiDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. euchoi@utmb.edu.
Ke ZhangDepartment of Biochemistry, Baylor University, Waco, TX 76706, USA. Ken_zhang@baylor.edu.
Yu ChenDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. yuchen@tjh.tjmu.edu.cn.
Sha YeDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. cindy.ye.dbm@gmail.com.
Xiaoling DengDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. xideng@utmb.edu.
Kangling ZhangDepartment of Pharmacology and Toxicology, University of Texas Medical Branch, Galveston, TX 77555, USA. kazhang@UTMB.EDU.
Xiaoyong BaoDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX 77555, USA. xibao@utmb.edu.
The University of Texas Medical Branch at Galveston · USHuazhong University of Science and Technology · CNBaylor University · US

Funding

UTMB Clinical and Translational Science AwardUL1TR001439 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI URBAN, RANDALL J · 2015 to 2024
$40.0M
tRNA-derived RNA Fragments (tRFs) and their Functions in Respiratory Syncytial Virus (RSV) InfectionR01AI116812 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2016 to 2020
$1.9M
Functional Portraits of tRNA-derived Small Non-coding RNAsR21AI113771 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2015 to 2016
$426k
Characterization of tRNA-derived RNA Fragments (tRFs) in Respiratory Syncytial ViR56AI107033 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2014 to 2014
$387k
NCATS NIH HHS UL1 TR001439NIAID NIH HHS R01 AI116812NIAID NIH HHS R21 AI113771NIAID NIH HHS R56 AI107033
6 · The paper itself

Abstract

Human metapneumovirus (hMPV) is a leading cause of lower respiratory infection in pediatric populations globally. This study examined proteomic profile changes in A549 cells infected with hMPV and two attenuated mutants with deleted PDZ domain-binding motif(s) in the M2-2 protein. These motifs are involved in the interruption of antiviral signaling, namely the interaction between the TNF receptor associated factor (TRAF) and mitochondrial antiviral-signaling (MAVS) proteins. The aim of this study was to provide insight into the overall and novel impact of M2-2 motifs on cellular responses via an unbiased comparison. Tandem mass tagging, stable isotope labeling, and high-resolution mass spectrometry were used for quantitative proteomic analysis. Using quantitative proteomics and Venn analysis, 1248 common proteins were detected in all infected samples of both technical sets. Hierarchical clustering of the differentiated proteome displayed distinct proteomic signatures that were controlled by the motif(s). Bioinformatics and experimental analysis confirmed the differentiated proteomes, revealed novel cellular biological events, and implicated key pathways controlled by hMPV M2-2 PDZ domain-binding motif(s). This provides further insight for evaluating M2-2 mutants as potent vaccine candidates.

Indexed as

hMPVM2-2 motifproteomics

Identifiers

PMID29207503
PMCPMC5748611
OpenAlexW2771883645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.