Evidence map›Paper›PMID 29207465›Full record

ArticleMolecules (Basel, Switzerland)2017

γPNA FRET Pair Miniprobes for Quantitative Fluorescent In Situ Hybridization to Telomeric DNA in Cells and Tissue.

Alexander Orenstein, April S Berlyoung, Elizabeth E Rastede, Ha H Pham, Elise Fouquerel, Connor T Murphy, Brian J Leibowitz, Jian Yu, Tumul Srivastava, Bruce A Armitage and 1 more

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Gamma-FIT-PNAs as sensitive RNA probes.RSC chemical biology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexander OrensteinDepartment of Environmental and Occupational Health, University of Pittsburgh Graduate School of Public Health, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. aso9@pitt.edu.
April S BerlyoungDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. aberlyou@andrew.cmu.edu.
Elizabeth E RastedeDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. lisa.rastede@nih.gov.
Ha H PhamDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. hhpham@knights.ucf.edu.
Elise FouquerelDepartment of Environmental and Occupational Health, University of Pittsburgh Graduate School of Public Health, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. elf51@pitt.edu.
Connor T MurphyDepartment of Environmental and Occupational Health, University of Pittsburgh Graduate School of Public Health, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. connorthomasmurphy@gmail.com.
Brian J LeibowitzDepartment of Pathology, University of Pittsburgh School of Medicine, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. leibowitzb@upmc.edu.
Jian YuDepartment of Pathology, University of Pittsburgh School of Medicine, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. YuJ2@upmc.edu.
Tumul SrivastavaPNA Innovations, Inc., 10-N Roessler Rd., Woburn, MA 01801, USA. tumul.srivastava@pnainnovations.com.
Bruce A ArmitageDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. army@cmu.edu.
Patricia L OpreskoDepartment of Environmental and Occupational Health, University of Pittsburgh Graduate School of Public Health, UPMC Hillman Cancer Center, Pittsburgh, PA 15213, USA. plo4@pitt.edu.

Funding

Mechanisms of Telomere Resistance to DNA Lesion RemovalR01ES022944 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI OPRESKO, PATRICIA L · 2013 to 2017
$1.6M
GammaPNA Miniprobes for Telomere Analysis and RNA FISHR44GM108187 · NIGMS · TRUCODE GENE REPAIR, INC. · PI ARMITAGE, BRUCE A., OPRESKO, PATRICIA L · 2016 to 2018
$1.4M
Deciphering the mechanisms of PARP1 activity in telomere integrityK99ES027028 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FOUQUEREL, ELISE · 2016 to 2017
$178k
NIEHS NIH HHS K99 ES027028NIEHS NIH HHS R01 ES022944NIGMS NIH HHS R44 GM108187
6 · The paper itself

Abstract

Measurement of telomere length by fluorescent in situ hybridization is widely used for biomedical and epidemiological research, but there has been relatively little development of the technology in the 20 years since it was first reported. This report describes the use of dual gammaPNA (γPNA) probes that hybridize at alternating sites along a telomere and give rise to Förster resonance energy transfer (FRET) signals. Bright staining of telomeres is observed in nuclei, chromosome spreads and tissue samples. The use of FRET detection also allows for elimination of wash steps, normally required to remove unhybridized probes that would contribute to background signals. We found that these wash steps can diminish the signal intensity through the removal of bound, as well as unbound probes, so eliminating these steps not only accelerates the process but also enhances the quality of staining. Thus, γPNA FRET pairs allow for brighter and faster staining of telomeres in a wide range of research and clinical formats.

Indexed as

Base SequenceCell CountCell LineDNAFluorescence Resonance Energy TransferFluorescent DyesHumansIn Situ Hybridization, FluorescenceMolecular StructureNucleic Acid HybridizationOptical ImagingOsteosarcomaPeptide Nucleic AcidsTelomereDNAFluorescent DyesPeptide Nucleic Acidsfluorescent imaginghybridization probetelomereγPNA

Identifiers

PMID29207465
PMCPMC5895088

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.