Evidence map›Paper›PMID 29206236›Full record

ArticlePloS one2017

Structural basis for the substrate selectivity of Helicobacter pylori NucT nuclease activity.

Louisa Celma, Christopher Corbinais, Julien Vercruyssen, Xavier Veaute, Inès Li de la Sierra-Gallay, Raphaël Guérois, Didier Busso, Aurélie Mathieu, Stéphanie Marsin, Sophie Quevillon-Cheruel and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Crystal Structure of a Phospholipase D from the Plant-Associated BacteriaInternational journal of molecular sciences · 2021
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Louisa CelmaInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette cedex, France.
Christopher CorbinaisInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.
Julien VercruyssenInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette cedex, France.
Xavier VeauteInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.
Inès Li de la Sierra-GallayInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette cedex, France.
Raphaël GuéroisInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette cedex, France.
Didier BussoInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.
Aurélie MathieuInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.
Stéphanie MarsinInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.
Sophie Quevillon-CheruelInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Gif-sur-Yvette cedex, France.
J Pablo RadicellaInstitute of Molecular and Cellular Radiobiology, CEA, Fontenay aux Roses, France.ORCID http://orcid.org/0000-0002-8807-7226
Inserm · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Phospholipase D (PLD) superfamily of proteins includes a group of enzymes with nuclease activity on various nucleic acid substrates. Here, with the aim of better understanding the substrate specificity determinants in this subfamily, we have characterised the enzymatic activity and the crystal structure of NucT, a nuclease implicated in Helicobacter pylori purine salvage and natural transformation and compared them to those of its bacterial and mammalian homologues. NucT exhibits an endonuclease activity with a strong preference for single stranded nucleic acids substrates. We identified histidine124 as essential for the catalytic activity of the protein. Comparison of the NucT crystal structure at 1.58 Å resolution reported here with those of other members of the sub-family suggests that the specificity of NucT for single-stranded nucleic acids is provided by the width of a positively charged groove giving access to the catalytic site.

Indexed as

Amino Acid SequenceCrystallography, X-RayEndonucleasesHelicobacter pyloriProtein ConformationSequence Homology, Amino AcidSubstrate SpecificityEndonucleases

Identifiers

PMID29206236
PMCPMC5714352
OpenAlexW2772003939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.