ArticleMicrobial biotechnology2018
Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.
Article in Microbial biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing.Microorganisms · 2022Article
- Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP.Scientific reports · 2021Article
- A multi-omic screening approach for the discovery of thermoactive glycoside hydrolases.Extremophiles : life under extreme conditions · 2021Article
- The Role ofMicroorganisms · 2020Article
- Genome Analyses and Genome-Centered Metatranscriptomics ofMicroorganisms · 2019Article
- Characterisation and microbial community analysis of lipid utilising microorganisms for biogas formation.PloS one · 2019Article
- Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants.Microbial biotechnology · 2018Article
- The Microbiome of the Gastrointestinal Tract of a Range-Shifting Marine Herbivorous Fish.Frontiers in microbiology · 2018Article
- Microbial Community Changes in a Chlorinated Solvents Polluted Aquifer Over the Field Scale Treatment With Poly-3-Hydroxybutyrate as Amendment.Frontiers in microbiology · 2018Article
- Next-generation -omics approaches to drive carboxylate production by acidogenic fermentation of food waste: a review.BioengineeredReview
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Authors and funding
6 authors.
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Abstract
Biogas production is performed anaerobically by complex microbial communities with key species driving the process. Hence, analyses of their in situ activities are crucial to understand the process. In a previous study, metagenome sequencing and subsequent genome binning for different production-scale biogas plants (BGPs) resulted in four genome bins of special interest, assigned to the phyla Thermotogae, Fusobacteria, Spirochaetes and Cloacimonetes, respectively, that were genetically analysed. In this study, metatranscriptome sequencing of the same BGP samples was conducted, enabling in situ transcriptional activity determination of these genome bins. For this, mapping of metatranscriptome reads on genome bin sequences was performed providing transcripts per million (TPM) values for each gene. This approach revealed an active sugar-based metabolism of the Thermotogae and Spirochaetes bins and an active amino acid-based metabolism of the Fusobacteria and Cloacimonetes bins. The data also hint at syntrophic associations of the four corresponding species with methanogenic Archaea.
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