Evidence map›Paper›PMID 29203807›Full record

ArticleScientific reports2017

Mitochondrial genomic variation and phylogenetic relationships of three groups in the genus Scaphoideus (Hemiptera: Cicadellidae: Deltocephalinae).

Yimin Du, Wu Dai, Christopher H Dietrich

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yimin DuKey Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Wu DaiKey Laboratory of Plant Protection Resources and Pest Management of the Ministry of Education, College of Plant Protection, Northwest A&F University, Yangling, 712100, Shaanxi, China. daiwu@nwsuaf.edu.cn.
Christopher H DietrichIllinois Natural History Survey, Prairie Research Institute, University of Illinois, 1816 S Oak St., Champaign, IL, 61820, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The widespread leafhopper genus Scaphoideus Uhler is the most diverse genus in Scaphoideini and includes some species that are serious pests and vectors of plant pathogens. Here the first Scaphoideus mitogenome sequences are provided for three species, S. maai, S. nigrivalveus and S. varius, representing three main species groups in the Oriental region based on color pattern. The lengths of these three mitogenomes were 15,188, 15,235 and 15,207 bp, respectively. Gene order of three mitogenomes is highly conserved and identical to that of the putative ancestral insect. All three mitogenomes exhibited similar AT nucleotide bias, AT-, GC-skews and codon usage. One large 101 bp intergenic spacer between trnY and cox1 was in S. varius. All 22 tRNA genes had typical cloverleaf secondary structures, except for trnS1 (AGN) which appears to lack the dihydrouridine arm. Genes atp8, nad6 and nad2 were highly variable while cox1 showed the lowest nucleotide diversity. Phylogenetic analyses of three concatenated nucleotide datasets using maximum likelihood and Bayesian methods, comprising all 13 mitogenomes currently available for Membracoidea plus mitogenomes for eight outgroup species representing other cicadomorphan superfamilies, yielded the same topology in which Scaphoideus species formed a monophyletic group within a larger clade comprising three other included Deltocephalinae.

Indexed as

Genome, MitochondrialAnimalsBayes TheoremDNAGenetic VariationHemipteraHigh-Throughput Nucleotide SequencingLikelihood FunctionsOpen Reading FramesPhylogenyRNA, TransferSequence Analysis, DNADNARNA, Transfer

Identifiers

PMID29203807
PMCPMC5714952

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.