Evidence map›Paper›PMID 29202874›Full record

ArticleInfectious diseases of poverty2017

Sensitive detection of HIV-1 resistance to Zidovudine and impact on treatment outcomes in low- to middle-income countries.

Richard M Gibson, Gabrielle Nickel, Michael Crawford, Fred Kyeyune, Colin Venner, Immaculate Nankya, Eva Nabulime, Emmanuel Ndashimye, Art F Y Poon, Robert A Salata and 4 more

Open access · goldAbstract read
In one paragraph

Article in Infectious diseases of poverty, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Richard M GibsonDepartment of Microbiology and Immunology, University of Western Ontario, 1151 Richmond St., Dental Sciences Bldg., Rm 3014, London, Ontario, N6A 5C1, Canada.
Gabrielle NickelDivision of Infectious Diseases, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Michael CrawfordDivision of Infectious Diseases, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Fred KyeyuneDepartment of Molecular Biology and Microbiology, Case Western Reserve University, Cleveland, OH, USA.
Colin VennerDepartment of Microbiology and Immunology, University of Western Ontario, 1151 Richmond St., Dental Sciences Bldg., Rm 3014, London, Ontario, N6A 5C1, Canada.
Immaculate NankyaDepartment of Molecular Biology and Microbiology, Case Western Reserve University, Cleveland, OH, USA.
Eva NabulimeCenter for AIDS Research Uganda Laboratories, Joint Clinical Research Centre, Kampala, Uganda.
Emmanuel NdashimyeCenter for AIDS Research Uganda Laboratories, Joint Clinical Research Centre, Kampala, Uganda.
Art F Y PoonDepartment of Pathology and Laboratory Medicine, University of Western Ontario, Kampala, Uganda.
Robert A SalataDivision of Infectious Diseases, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Cissy KityoCenter for AIDS Research Uganda Laboratories, Joint Clinical Research Centre, Kampala, Uganda.
Peter MugyenyiCenter for AIDS Research Uganda Laboratories, Joint Clinical Research Centre, Kampala, Uganda.
Miguel E Quiñones-MateuDivision of Infectious Diseases, Department of Medicine, Case Western Reserve University, Cleveland, OH, USA.
Eric J ArtsDepartment of Microbiology and Immunology, University of Western Ontario, 1151 Richmond St., Dental Sciences Bldg., Rm 3014, London, Ontario, N6A 5C1, Canada. earts@uwo.ca.ORCID http://orcid.org/0000-0002-4880-7968
Joint Clinical Research Centre · UGCase Western Reserve University · USWestern University · CA

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Alan David Levine · 1994 to 2026
$50.0M
TRAINING IN HIV-RELATED MALIGNANCIESD43TW000011 · FIC · CASE WESTERN RESERVE UNIVERSITY · PI WHALEN, CHRISTOPHER C. · 1988 to 2012
$10.9M
Impact of HIV-1 Fitness on Disease ProgressionR01AI049170 · NIAID · UNIVERSITY OF WESTERN ONTARIO · PI ARTS, ERIC J · 2002 to 2024
$6.8M
HIV-1 Fitness and RecombinationR56AI049170 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ARTS, ERIC J · 2012 to 2012
$400k
Basic HIV and HIV/AIDS-related Diseases Science Training Program for UgandaD43TW009780 · FIC · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY · 2014 to 2014
$289k
Impact of HIV-1 Fitness on Disease ProgressionR21AI049170 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ARTS, ERIC J · 2001 to 2001
$265k
FIC NIH HHS D43 TW000011FIC NIH HHS D43-TW000011FIC NIH HHS D43 TW009780FIC NIH HHS D43-TW009780NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI049170NIAID NIH HHS R21 AI049170NIAID NIH HHS R56 AI049170NIH HHS AI49170NIH HHS P30 AI036219
6 · The paper itself

Abstract

backgroundThymidine analogs, namely AZT (Zidovudine or Retrovir™) and d4T (Stavudine or Zerit™) are antiretroviral drugs still employed in over 75% of first line combination antiretroviral therapy (cART) in Kampala, Uganda despite aversion to prescribing these drugs for cART in high income countries due in part to adverse events. For this study, we explored how the continued use of these thymidine analogs in cART could impact emergence of drug resistance and impact on future treatment success in Uganda, a low-income country.

methodsWe examined the drug resistance genotypes by Sanger sequencing of 262 HIV-infected patients failing a first line combined antiretroviral treatment containing either AZT or d4T, which represents approximately 5% of the patients at the Joint Clinical Research Center receiving a AZT or d4T containing treatment. Next generation sequencing (DEEPGEN™HIV) and multiplex oligonucleotide ligation assays (AfriPOLA) were then performed on a subset of patient samples to detect low frequency drug resistant mutations. CD4 cell counts, viral RNA loads, and treatment changes were analyzed in a cohort of treatment success and failures.

resultsOver 80% of patients failing first line AZT/d4T-containing cART had predicted drug resistance to 3TC (Lamivudine) and non-nucleoside RT inhibitors (NNRTIs) in the treatment regimen but only 45% had resistance AZT/d4T associated resistance mutations (TAMs). TAMs were however detected at low frequency within the patients HIV quasispecies (1-20%) in 21 of 34 individuals who were failing first-line AZT-containing cART and lacked TAMs by Sanger. Due to lack of TAMs by Sanger, AZT was typically maintained in second-line therapies and these patients had a low frequency of subsequent virologic success.

conclusionsOur findings suggest that continued use of AZT and d4T in first-line treatment in low-to-middle income countries may lead to misdiagnosis of HIV-1 drug resistance and possibly enhance a succession of second- and third-line treatment failures.

Indexed as

Drug Resistance, ViralTreatment OutcomeAdolescentAdultAnti-HIV AgentsCD4 Lymphocyte CountChildChild, PreschoolCohort StudiesFemaleHIV-1HIV InfectionsHumansMaleMiddle AgedTreatment FailureAnti-HIV AgentsZidovudineAntiretroviral treatmentDrug resistanceUganda

Identifiers

PMID29202874
PMCPMC5716384
OpenAlexW2773116112

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.