Evidence map›Paper›PMID 29202873›Full record

ArticleVeterinary research2017

Gene expression in the chicken caecum is dependent on microbiota composition.

Jiri Volf, Ondrej Polansky, Zuzana Sekelova, Philippe Velge, Catherine Schouler, Bernd Kaspers, Ivan Rychlik

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Jiri VolfVeterinary Research Institute, Hudcova 70, 621 00, Brno, Czech Republic.
Ondrej PolanskyVeterinary Research Institute, Hudcova 70, 621 00, Brno, Czech Republic.
Zuzana SekelovaVeterinary Research Institute, Hudcova 70, 621 00, Brno, Czech Republic.
Philippe VelgeISP, INRA, Université François Rabelais de Tours, 37380, Nouzilly, France.
Catherine SchoulerISP, INRA, Université François Rabelais de Tours, 37380, Nouzilly, France.
Bernd KaspersDepartment for Veterinary Sciences, Institute for Animal Physiology, Faculty of Veterinary Medicine, Ludwig-Maximilians-Universität München, Veterinastr. 13, 80539, Munich, Germany.
Ivan RychlikVeterinary Research Institute, Hudcova 70, 621 00, Brno, Czech Republic. rychlik@vri.cz.
Veterinary Research Institute · CZUniversité de Tours · FRLudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gut microbiota is of considerable importance for each host. Despite this, germ-free animals can be obtained and raised to sexual maturity and consequences of the presence or absence of gut microbiota on gene expression of the host remain uncharacterised. In this study, we performed an unbiased study of protein expression in the caecum of germ-free and colonised chickens. The major difference between these two groups was in the expression of immunoglobulins which were essentially absent in the germ-free chickens. Microbiota also caused a minor decrease in the expression of focal adhesion and extracellular matrix proteins and an increase in the expression of argininosuccinate synthase ASS1, redox potential sensing, fermentative metabolic processes and detoxification systems represented by sulfotransferases SULT1C3 or SULT1E1. Since we also analysed expression in the caecum of E. coli Nissle and E. faecium DSM7134 mono-associated chickens, we concluded that at least immunoglobulin expression and expression of cystathionine synthase (CBS) was dependent on microbiota composition with E. coli Nissle stimulating more immunoglobulin and PIGR expression and E. faecium DSM7134 stimulating more CBS expression. Gut microbiota and its composition therefore affected protein expression in the chicken caecum though except for immunoglobulin production, the remaining differences were unexpectedly low.

Indexed as

Gene ExpressionAnimalsAvian ProteinsCecumChickensEnterococcus faeciumEscherichia coliGastrointestinal MicrobiomeGerm-Free LifeAvian Proteins

Identifiers

PMID29202873
PMCPMC5716255
OpenAlexW2774948581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.