Evidence map›Paper›PMID 29202699›Full record

ArticleBMC microbiology2017

Comparison of lipopolysaccharides composition of two different strains of Helicobacter pylori.

Kristy Leker, Ivonne Lozano-Pope, Keya Bandyopadhyay, Biswa P Choudhury, Marygorret Obonyo

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Bacterial lipopolysaccharide induces settlement and metamorphosis in a marine larva.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Review
  5. Article
  6. Whole-Genome Sequencing and Comparative Genomics of ThreePathogens (Basel, Switzerland) · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. The Interaction ofInternational journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kristy LekerDivision of Infectious Diseases, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, California, 92093, USA.
Ivonne Lozano-PopeDivision of Infectious Diseases, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, California, 92093, USA.
Keya BandyopadhyayGlycotechnology Core Resources, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, California, 92093, USA.
Biswa P ChoudhuryGlycotechnology Core Resources, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, California, 92093, USA.
Marygorret ObonyoDivision of Infectious Diseases, Department of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, California, 92093, USA. mobonyo@ucsd.edu.ORCID http://orcid.org/0000-0001-8703-8404
University of California San Diego · US

Funding

Role of inflammatory microenvironment in Helicobacter-induced gastric cancerR21CA188752 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OBONYO, MARYGORRET · 2015 to 2016
$371k
NCI NIH HHS R21 CA188752NIH HHS R21CA188752
6 · The paper itself

Abstract

backgroundHelicobacter pylori (H. pylori) is a Gram-negative, microaerophilic bacterium that is recognized as a major cause of chronic gastritis, peptic ulcers, and gastric cancer. Comparable to other Gram-negative bacteria, lipopolysaccharides (LPS) are an important cellular component of the outer membrane of H. pylori. The LPS of this organism plays a key role in its colonization and persistence in the stomach. In addition, H. pylori LPS modulates pathogen-induced host inflammatory responses resulting in chronic inflammation within the gastrointestinal tract. Very little is known about the comparative LPS compositions of different strains of H. pylori with varied degree of virulence in human. Therefore, LPS was analyzed from two strains of H. pylori with differing potency in inducing inflammatory responses (SS1 and G27). LPS were extracted from aqueous and phenol layer of hot-phenol water extraction method and subjected for composition analysis by gas chromatography - mass spectrometry (GC-MS) to sugar and fatty acid compositions.

resultsThe major difference between the two strains of H. pylori is the presence of Rhamnose, Fucose and GalNAc in the SS1 strain, which was either not found or with low abundance in the G27 strain. On the other hand, high amount of Mannose was present in G27 in comparison to SS1. Fatty acid composition of lipid-A portion also showed considerable amount of differences between the two strains, phenol layer of SS1 had enhanced amount of 3 hydroxy decanoic acid (3-OH-C10:0) and 3-hydroxy dodecanoic acid (3-OH-C12:0) which were not present in G27, whereas myristic acid (C14:0) was present in G27 in relatively high amount.

conclusionThe composition analysis of H. pylori LPS, revealed differences in sugars and fatty acids composition between a mouse adapted strain SS1 and G27. This knowledge provides a novel way to dissect out their importance in host-pathogen interaction in further studies.

Indexed as

Fatty AcidsGas Chromatography-Mass SpectrometryHelicobacter pyloriLipopolysaccharidesMonosaccharidesSpecies SpecificityFatty Acidslipopolysaccharide, Helicobacter pyloriLipopolysaccharidesMonosaccharidesChemical compositionHelicobacter pyloriLipopolysaccharide

Identifiers

PMID29202699
PMCPMC5715995
OpenAlexW2771691896

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.