Evidence map›Paper›PMID 29202176›Full record

ArticleGenome biology and evolution2018

Distribution and Evolution of Peroxisomes in Alveolates (Apicomplexa, Dinoflagellates, Ciliates).

Ann-Kathrin Ludewig-Klingner, Victoria Michael, Michael Jarek, Henner Brinkmann, Jörn Petersen

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  8. Anaerobic peroxisomes inProceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ann-Kathrin Ludewig-KlingnerLeibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Department of Protists and Cyanobacteria (PuC), Braunschweig, Germany.
Victoria MichaelLeibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Department of Protists and Cyanobacteria (PuC), Braunschweig, Germany.
Michael JarekHelmholtz-Centre for Infection Research (HZI), Group of Genome Analytics, Braunschweig, Germany.
Henner BrinkmannLeibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Department of Protists and Cyanobacteria (PuC), Braunschweig, Germany.
Jörn PetersenLeibniz-Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Department of Protists and Cyanobacteria (PuC), Braunschweig, Germany.
Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEHelmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The peroxisome was the last organelle to be discovered and five decades later it is still the Cinderella of eukaryotic compartments. Peroxisomes have a crucial role in the detoxification of reactive oxygen species, the beta-oxidation of fatty acids, and the biosynthesis of etherphospholipids, and they are assumed to be present in virtually all aerobic eukaryotes. Apicomplexan parasites including the malaria and toxoplasmosis agents were described as the first group of mitochondriate protists devoid of peroxisomes. This study was initiated to reassess the distribution and evolution of peroxisomes in the superensemble Alveolata (apicomplexans, dinoflagellates, ciliates). We established transcriptome data from two chromerid algae (Chromera velia, Vitrella brassicaformis), and two dinoflagellates (Prorocentrum minimum, Perkinsus olseni) and identified the complete set of essential peroxins in all four reference species. Our comparative genome analysis provides unequivocal evidence for the presence of peroxisomes in Toxoplasma gondii and related genera. Our working hypothesis of a common peroxisomal origin of all alveolates is supported by phylogenetic analyses of essential markers such as the import receptor Pex5. Vitrella harbors the most comprehensive set of peroxisomal proteins including the catalase and the glyoxylate cycle and it is thus a promising model organism to investigate the functional role of this organelle in Apicomplexa.

Indexed as

PhylogenyApicomplexaBiological EvolutionCiliophoraDinoflagellidaMetabolic Networks and PathwaysPeroxinsPeroxisomesTranscriptomePeroxinscatalasediagnostic peroxinsglyoxylate cyclephylogenyToxoplasma gondiiVitrella brassicaformis

Identifiers

PMID29202176
PMCPMC5755239
OpenAlexW2774273311

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.