Evidence map›Paper›PMID 29201571›Full record

ArticlePeerJ2017

Transcriptomic profiling of mTOR and ryanodine receptor signaling molecules in developing zebrafish in the absence and presence of PCB 95.

Daniel F Frank, Galen W Miller, Richard E Connon, Juergen Geist, Pamela J Lein

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Transcriptome in Mice.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Daniel F FrankDepartment of Anatomy, Physiology and Cell Biology, University of California, Davis, CA, USA.
Galen W MillerDepartment of Molecular Biosciences, University of California, Davis, CA, USA.ORCID 0000-0002-1702-5592
Richard E ConnonDepartment of Anatomy, Physiology and Cell Biology, University of California, Davis, CA, USA.
Juergen GeistDepartment of Ecology and Ecosystem Management, Technical University Munich, Freising, Germany.ORCID 0000-0001-7698-3443
Pamela J LeinDepartment of Molecular Biosciences, University of California, Davis, CA, USA.
University of California, Davis · USTechnical University of Munich · DE

Funding

Molecular and Cellular Basis of PCB Developmental Neurotoxicity: ViCTER supplementR01ES014901 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI HANS-JOACHIM LEHMLER, Pamela J Lein · 2009 to 2026
$9.3M
PCBs interact with mTOR signaling to disrupt neuronal connectivity in zebrafishF32ES024070 · NIEHS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI MILLER, GALEN WILLIAM · 2014 to 2016
$169k
NIEHS NIH HHS F32 ES024070NIEHS NIH HHS R01 ES014901
6 · The paper itself

Abstract

The mechanistic target of rapamycin (mTOR) and ryanodine receptor (RyR) signaling pathways regulate fundamental processes of neurodevelopment, and genetic mutations within these pathways have been linked to neurodevelopmental disorders. While previous studies have established that these signaling molecules are expressed in developing zebrafish, a detailed characterization of the ontogenetic profile of these signaling molecules is lacking. Thus, we evaluated the spatiotemporal expression of key transcripts in mTOR and RyR signaling pathways in wildtype zebrafish at 24, 72 and 120 hours post fertilization (hpf). We further determined whether transcriptional profiles of a subset of genes in both pathways were altered by exposure to PCB 95 (2,2',3,5',6-pentachlorobiphenyl), a pervasive environmental contaminant known to cause developmental neurotoxicity in mammalian systems via RyR-dependent mechanisms. Quantitative PCR revealed that transcription generally increased across development. Genes in the signaling pathway upstream of the mTORC1 complex, and the RyR-paralogs,

Indexed as

mTORNeurodevelopmental disordersPersistent organic pollutantsRyanodine receptorTranscriptomic profilingZebrafish

Identifiers

PMID29201571
PMCPMC5712209
OpenAlexW2769956249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.