Evidence map›Paper›PMID 29201567›Full record

ArticlePeerJ2017

The zebrafish as a model system for analyzing mammalian and native

Mason Posner, Kelly L Murray, Matthew S McDonald, Hayden Eighinger, Brandon Andrew, Amy Drossman, Zachary Haley, Justin Nussbaum, Larry L David, Kirsten J Lampi

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Mason PosnerDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Kelly L MurrayDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Matthew S McDonaldDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Hayden EighingerDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Brandon AndrewDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Amy DrossmanDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Zachary HaleyDepartment of Biology/Toxicology, Ashland University, Ashland, OH, United States of America.
Justin NussbaumDepartment of Biology, Lakeland Community College, Kirtland, OH, United States of America.
Larry L DavidDepartment of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, OR, United States of America.
Kirsten J LampiDepartment of Integrative Biosciences, Oregon Health and Science University, Portland, OR, United States of America.
Ashland University · USOregon Health & Science University · USLakeland Community College · US

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Kate E Keller · 1995 to 2026
$19.4M
Aggregation of Deamidated Crystallins as a Major Cause of CataractsR01EY027012 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI LAMPI, KIRSTEN JEANNE · 2016 to 2024
$1.9M
Using zebrafish as a model system for investigating lens development, aging and cataract.R15EY013535 · NEI · ASHLAND UNIVERSITY · PI POSNER, MASON · 2001 to 2024
$1.3M
LTQ Orbitrap VelosS10OD012246 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2012 to 2012
$854k
NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY027012NEI NIH HHS R15 EY013535NIH HHS S10 OD012246
6 · The paper itself

Abstract

Previous studies have used the zebrafish to investigate the biology of lens crystallin proteins and their roles in development and disease. However, little is known about zebrafish α-crystallin promoter function, how it compares to that of mammals, or whether mammalian α-crystallin promoter activity can be assessed using zebrafish embryos. We injected a variety of α-crystallin promoter fragments from each species combined with the coding sequence for green fluorescent protein (GFP) into zebrafish zygotes to determine the resulting spatiotemporal expression patterns in the developing embryo. We also measured mRNA levels and protein abundance for all three zebrafish α-crystallins. Our data showed that mouse and zebrafish αA-crystallin promoters generated similar GFP expression in the lens, but with earlier onset when using mouse promoters. Expression was also found in notochord and skeletal muscle in a smaller percentage of embryos. Mouse αB-crystallin promoter fragments drove GFP expression primarily in zebrafish skeletal muscle, with less common expression in notochord, lens, heart and in extraocular regions of the eye. A short fragment containing only a lens-specific enhancer region increased lens and notochord GFP expression while decreasing muscle expression, suggesting that the influence of mouse promoter control regions carries over into zebrafish embryos. The two paralogous zebrafish αB-crystallin promoters produced subtly different expression profiles, with the aBa promoter driving expression equally in notochord and skeletal muscle while the αBb promoter resulted primarily in skeletal muscle expression. Messenger RNA for zebrafish αA increased between 1 and 2 days post fertilization (dpf), αBa increased between 4 and 5 dpf, but

Indexed as

CrystallinsGene expressionGFPLensMass spectrometryPromotersProteomicsVisionZebrafish

Identifiers

PMID29201567
PMCPMC5708185
OpenAlexW2600530860

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.