Evidence map›Paper›PMID 29199990›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

Meditope-Fab interaction: threading the hole.

Krzysztof P Bzymek, Yuelong Ma, Kendra N Avery, David A Horne, John C Williams

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Krzysztof P BzymekDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, 1710 Flower Street, Duarte, CA 91101, USA.
Yuelong MaDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, 1710 Flower Street, Duarte, CA 91101, USA.
Kendra N AveryDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, 1710 Flower Street, Duarte, CA 91101, USA.
David A HorneDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, 1710 Flower Street, Duarte, CA 91101, USA.
John C WilliamsDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, 1710 Flower Street, Duarte, CA 91101, USA.

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Optimization of multivalent ligands by super-resolution microscopy to treat canceR21CA174608 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI TALISMAN, TIJANA, WILLIAMS, JOHN CHARLES · 2013 to 2015
$650k
Monoclonal Antibody-based Prodrugs - Novel Tools for Cancer TherapyR21CA135216 · NCI · THOMAS JEFFERSON UNIVERSITY · PI RODECK, ULRICH, WILLIAMS, JOHN CHARLES · 2010 to 2011
$392k
NCI NIH HHS P30 CA033572NCI NIH HHS R21 CA135216NCI NIH HHS R21 CA17608
6 · The paper itself

Abstract

Meditope, a cyclic 12-residue peptide, binds to a unique binding side between the light and heavy chains of the cetuximab Fab. In an effort to improve the affinity of the interaction, it was sought to extend the side chain of Arg8 in the meditope, a residue that is accessible from the other side of the meditope binding site, in order to increase the number of interactions. These modifications included an n-butyl and n-octyl extension as well as hydroxyl, amine and carboxyl substitutions. The atomic structures of the complexes and the binding kinetics for each modified meditope indicated that each extension threaded through the Fab `hole' and that the carboxyethylarginine substitution makes a favorable interaction with the Fab, increasing the half-life of the complex by threefold compared with the unmodified meditope. Taken together, these studies provide a basis for the design of additional modifications to enhance the overall affinity of this unique interaction.

Indexed as

ArginineBinding SitesCetuximabCrystallography, X-RayHalf-LifeHydrogen BondingImmunoglobulin Fab FragmentsModels, MolecularPeptides, CyclicProtein ConformationStatic ElectricityStructure-Activity RelationshipSurface Plasmon ResonanceArginineCetuximabImmunoglobulin Fab FragmentsPeptides, Cyclicmeditopemonoclonal antibodiessurface plasmon resonanceX-ray crystallography

Identifiers

PMID29199990
PMCPMC5713674

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.