Evidence map›Paper›PMID 29199987›Full record

ArticleActa crystallographica. Section F, Structural biology communications2017

Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose 3,5-epimerase (RfbC).

Aleksander Shornikov, Ha Tran, Jennifer Macias, Andrei S Halavaty, George Minasov, Wayne F Anderson, Misty L Kuhn

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Biosynthesis of d-Biochemistry · 2021
    Article
  3. ThemBio · 2020
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aleksander ShornikovDepartment of Chemistry and Biochemistry, San Francisco State University, USA.
Ha TranDepartment of Chemistry and Biochemistry, San Francisco State University, USA.
Jennifer MaciasDepartment of Chemistry and Biochemistry, San Francisco State University, USA.
Andrei S HalavatyDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, USA.
George MinasovDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, USA.ORCID 0000-0001-5460-3462
Wayne F AndersonDepartment of Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, USA.
Misty L KuhnDepartment of Chemistry and Biochemistry, San Francisco State University, USA.

Funding

NIAID NIH HHS HHSN272200700058CNIAID NIH HHS HHSN272201200026C
6 · The paper itself

Abstract

The exosporium layer of Bacillus anthracis spores is rich in L-rhamnose, a common bacterial cell-wall component, which often contributes to the virulence of pathogens by increasing their adherence and immune evasion. The biosynthetic pathway used to form the activated L-rhamnose donor dTDP-L-rhamnose consists of four enzymes (RfbA, RfbB, RfbC and RfbD) and is an attractive drug target because there are no homologs in mammals. It was found that co-purifying and screening RfbC (dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase) from B. anthracis in the presence of the other three B. anthracis enzymes of the biosynthetic pathway yielded crystals that were suitable for data collection. RfbC crystallized as a dimer and its structure was determined at 1.63 Å resolution. Two different ligands were bound in the protein structure: pyrophosphate in the active site of one monomer and dTDP in the other monomer. A structural comparison with RfbC homologs showed that the key active-site residues are conserved across kingdoms.

Indexed as

Bacillus anthracisBacterial ProteinsCarbohydrate DehydrogenasesCarbohydrate EpimerasesCatalytic DomainCrystallography, X-RayDiphosphatesModels, MolecularProtein ConformationStructural Homology, ProteinBacterial ProteinsCarbohydrate DehydrogenasesCarbohydrate EpimerasesDiphosphatesdiphosphoric aciddTDP-4-ketorhamnose 3,5-epimeraseAnthraxBacillus anthracisdTDP-4-dehydrorhamnose 3,5-epimeraseRfbC

Identifiers

PMID29199987
PMCPMC5713671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.