Evidence map›Paper›PMID 29199981›Full record

ArticleActa crystallographica. Section D, Structural biology2017

Solving the scalability issue in quantum-based refinement: Q|R#1.

Min Zheng, Nigel W Moriarty, Yanting Xu, Jeffrey R Reimers, Pavel V Afonine, Mark P Waller

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. In situ ligand restraints from quantum-mechanical methods.Acta crystallographica. Section D, Structural biology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Min ZhengInternational Center for Quantum and Molecular Structures, Shanghai University, Shanghai 200444, People's Republic of China.
Nigel W MoriartyMolecular Biosciences and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0001-8857-9464
Yanting XuInternational Center for Quantum and Molecular Structures, Shanghai University, Shanghai 200444, People's Republic of China.
Jeffrey R ReimersInternational Center for Quantum and Molecular Structures, Shanghai University, Shanghai 200444, People's Republic of China.
Pavel V AfonineInternational Center for Quantum and Molecular Structures, Shanghai University, Shanghai 200444, People's Republic of China.
Mark P WallerInternational Center for Quantum and Molecular Structures, Shanghai University, Shanghai 200444, People's Republic of China.ORCID 0000-0003-1650-5161

Funding

PROJECT 5 - DUKE - STRUCTURE VALIDATION AND IMPROVEMENT FOR PROTEINS AND N. ACIDSP01GM063210 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI ADAMS, PAUL DAVID · 2001 to 2021
$33.5M
Deutsche Forschungsgemeinschaft SFB858National Institutes of Health GM063210NIGMS NIH HHS P01 GM063210Phenix Industrial ConsortiumShanghai Eastern Scholar Program
6 · The paper itself

Abstract

Accurately refining biomacromolecules using a quantum-chemical method is challenging because the cost of a quantum-chemical calculation scales approximately as n

Indexed as

Quantum TheorySoftwareHumansModels, MolecularProteinsProteinsfragmentationgraph clusteringQ|R#1quantum refinement

Identifiers

PMID29199981
PMCPMC5713877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.