Evidence map›Paper›PMID 29199980›Full record

ArticleActa crystallographica. Section D, Structural biology2017

Molecular architectures of benzoic acid-specific type III polyketide synthases.

Charles Stewart, Kate Woods, Greg Macias, Andrew C Allan, Roger P Hellens, Joseph P Noel

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Xanthone Biosynthetic Pathway in Plants: A Review.Frontiers in plant science · 2022
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Open life sciences · 2020
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Charles StewartHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Kate WoodsHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Greg MaciasHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Andrew C AllanThe New Zealand Institute for Plant and Food Research Limited (PFR), Auckland, New Zealand.
Roger P HellensThe New Zealand Institute for Plant and Food Research Limited (PFR), Auckland, New Zealand.ORCID 0000-0003-2094-0887
Joseph P NoelHoward Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Salk Institute for Biological Studies · USPlant & Food Research · NZ

Funding

National Science Foundation 0805691National Science Foundation EEC-0813570National Science Foundation MCB-0645794
6 · The paper itself

Abstract

Biphenyl synthase and benzophenone synthase constitute an evolutionarily distinct clade of type III polyketide synthases (PKSs) that use benzoic acid-derived substrates to produce defense metabolites in plants. The use of benzoyl-CoA as an endogenous substrate is unusual for type III PKSs. Moreover, sequence analyses indicate that the residues responsible for the functional diversification of type III PKSs are mutated in benzoic acid-specific type III PKSs. In order to gain a better understanding of structure-function relationships within the type III PKS family, the crystal structures of biphenyl synthase from Malus × domestica and benzophenone synthase from Hypericum androsaemum were compared with the structure of an archetypal type III PKS: chalcone synthase from Malus × domestica. Both biphenyl synthase and benzophenone synthase contain mutations that reshape their active-site cavities to prevent the binding of 4-coumaroyl-CoA and to favor the binding of small hydrophobic substrates. The active-site cavities of biphenyl synthase and benzophenone synthase also contain a novel pocket associated with their chain-elongation and cyclization reactions. Collectively, these results illuminate structural determinants of benzoic acid-specific type III PKSs and expand the understanding of the evolution of specialized metabolic pathways in plants.

Indexed as

Acyl Coenzyme AAcyltransferasesCarbon-Carbon LigasesCatalytic DomainCloning, MolecularCrystallography, X-RayEvolution, MolecularHypericumMalusModels, MolecularMolecular StructurePhylogenyAcyl Coenzyme AAcyltransferasesbenzophenone synthasebenzoyl-coenzyme ACarbon-Carbon Ligasesflavanone synthetasebenzophenone synthasebenzoyl-CoAbiphenyl synthasechalcone synthasepolyketide synthasethiolase

Identifiers

PMID29199980
PMCPMC5713876
OpenAlexW2773727872

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.