Evidence map›Paper›PMID 29198934›Full record

ArticleJournal of clinical lipidology

Novel polymorphisms associated with hyperalphalipoproteinemia and apparent cardioprotection.

Connor P Oates, Darya Koenig, Jeffrey Rhyne, Nikolay Bogush, Jeffrey O'Connell, Braxton D Mitchell, Michael Miller

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical lipidology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Connor P OatesDivision of Cardiovascular Medicine, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Darya KoenigDivision of Cardiovascular Medicine, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Jeffrey RhyneDivision of Cardiovascular Medicine, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Nikolay BogushDivision of Cardiovascular Medicine, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Jeffrey O'ConnellDivision of Endocrinology, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Braxton D MitchellDivision of Endocrinology, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA.
Michael MillerDivision of Cardiovascular Medicine, Department of Medicine, University of Maryland School of Medicine and the Veterans Affairs Medical Center, Baltimore, MD, USA. Electronic address: mmiller@som.umaryland.edu.
University of Maryland, Baltimore · US

Funding

Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
MOLECULAR &CLINICAL EVALUATION OF LOW HDL SYNDROMESR01HL061369 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI MILLER, MICHAEL · 2000 to 2003
$1.6M
Unraveling the Genetic Architecture of Very High HDL cholesterol though TranscripR21HL094980 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI MILLER, MICHAEL · 2009 to 2010
$347k
NHLBI NIH HHS R01 HL061369NHLBI NIH HHS R21 HL094980NIDDK NIH HHS P30 DK072488
6 · The paper itself

Abstract

backgroundHyperalphalipoproteinemia (HALP) is inversely correlated with coronary heart disease (CHD) although genetic variants associated with high serum levels of high-density lipoprotein cholesterol (HDL-C) have not been shown to be cardioprotective.

objectiveThe objective of the study was to uncover novel genetic variants associated with HALP and possibly with reduced risk of CHD.

methodsExome sequencing data, HDL-C, and triglyceride levels were analyzed in 1645 subjects. They included the University of Maryland outpatients with high HDL-C (n = 12), Cardiovascular Health Study (n = 210), Jackson Heart Study (n = 402), Multi-Ethnic Study of Atherosclerosis (n = 404), Framingham Heart Study (n = 463), and Old Order Amish (n = 154).

resultsNovel nonsynonymous single-nucleotide polymorphisms (nsSNPs) were identified in men and women with primary HALP (mean HDL-C, 145 ± 30 mg/dL). Using PolyPhen-2 and Combined Annotation Dependent Depletion to estimate the predictive effect of each nsSNP on the gene product, rare, deleterious polymorphisms in UGT1A3, PLLP, PLEKHH1, ANK2, DIS3L, ACACB, and LRP4 were identified in 16 subjects with HALP but not in any tested subject with low HDL-C (<40 mg/dL). In addition, a single novel polymorphism, rs376849274, was found in OSBPL1A. The majority of these candidate genes have been implicated in fat and lipid metabolism, and none of these subjects has a history of CHD despite 75% of subjects having risk factors for CHD. Overall, the probability of finding these nsSNPs in a non-high HDL-C population ranges from 1 × 10

conclusionNovel functional polymorphisms in 8 candidate genes are associated with HALP in the absence of CHD. Future study is required to examine the extent to which these genes may affect HDL function and serve as potential therapeutic targets for CHD risk reduction.

Indexed as

Polymorphism, Single NucleotideAgedAged, 80 and overCholesterol, HDLExome SequencingFemaleGene FrequencyGlucuronosyltransferaseHumansHyperlipoproteinemiasMaleMiddle AgedMyelin and Lymphocyte-Associated Proteolipid ProteinsOxysterol Binding ProteinsPedigreePhenotypeCholesterol, HDLGlucuronosyltransferaseMyelin and Lymphocyte-Associated Proteolipid ProteinsOxysterol Binding ProteinsPLLP protein, humanReceptors, SteroidTriglyceridesUDP-glucuronosyltransferase, UGT1A3CADcardioprotectionExome sequencingHALPHDL-CHyperalpha

Identifiers

PMID29198934
PMCPMC5816714
OpenAlexW2765616918

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.