Evidence map›Paper›PMID 29197418›Full record

ArticleParasites & vectors2017

Tagging to endogenous genes of Plasmodium falciparum using CRISPR/Cas9.

Dexuan Kuang, Jichen Qiao, Zhou Li, Weiwei Wang, Hui Xia, Lubin Jiang, Jiejie Dai, Qiang Fang, Xueyu Dai

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Efficient generation of mNeonGreenFrontiers in cellular and infection microbiology · 2022
    Article
  7. Article
  8. Review
  9. ABiology open · 2019
    Article
  10. Plasmodium falciparum In Vitro Drug Resistance Selections and Gene Editing.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Dexuan KuangInstitute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical College, Kunming, Yunnan, 650118, China.
Jichen QiaoDepartment of Microbiology and Parasitology, Chinese Academy of Medical Science and Peking Union Medical College, Kunming, Yunnan, 650118, China.
Zhou LiInstitut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, 200031, China.
Weiwei WangInstitut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, 200031, China.
Hui XiaDepartment of Microbiology and Parasitology, Chinese Academy of Medical Science and Peking Union Medical College, Kunming, Yunnan, 650118, China.
Lubin JiangInstitut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, 200031, China.
Jiejie DaiInstitute of Medical Biology, Chinese Academy of Medical Science and Peking Union Medical College, Kunming, Yunnan, 650118, China. djj@imbcams.com.cn.
Qiang FangDepartment of Microbiology and Parasitology, Chinese Academy of Medical Science and Peking Union Medical College, Kunming, Yunnan, 650118, China. fq333@sohu.com.
Xueyu DaiInstitut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, 200031, China. xydai@ips.ac.cn.
Bengbu Medical College · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CNInstitut Pasteur of Shanghai · CN

Funding

Anhui Provincial Natural Science Foundation 1308085MH160the National Natural Science Foundation of China 31571345the Scientific Research Innovation Team Project of Anhui Colleges and Universities 2016-40Training Project for Provincial Academic Technology Leaders in Anhui Colleges and Universities 2014053Yunnan science and technology plan project 2016HB006
6 · The paper itself

Abstract

backgroundPlasmodium falciparum is the deadliest malaria parasite. Currently, there are seldom commercial antibodies against P. falciparum proteins, which greatly limits the study on Plasmodium. CRISPR/Cas9 is an efficient genome editing method, which has been employed in various organisms. However, the use of this technique in P. falciparum is still limited to gene knockout, site-specific mutation and generation of green fluorescent protein (GFP) reporter line with disruption of inserted sites.

resultsWe have adapted the CRISPR/Cas9 system to add commercial tag sequences to endogenous genes of P. falciparum. To add HA or HA-TY1 tags to ck2β1, ck2α and stk, pL6cs-hDHFR-ck2β1/ck2α/stk was constructed, which contained sequences of tags, specific homologous arms, and sgRNA. The P. falciparum 3D7 strain was subsequently transfected with pUF1-BSD-Cas9 and pL6cs-hDHFR-ck2β1/ck2α/stk plasmids via electroporation. After that, BSD and WR99210 drugs were added to the culture to screen parasites containing both plasmids. Twenty days after electroporation, live parasites appeared and were collected to check the tagging by PCR, DNA sequencing, Western blotting and immuno-fluorescence assays. The results showed that the tags were successfully integrated into the C-terminus of these three proteins.

conclusionsWe have improved the method to integrate tags to Plasmodium falciparum genes using the CRISPR/Cas9 method, which lays the foundation for further study of Plasmodium falciparum at the molecular level.

Indexed as

CRISPR-Cas SystemsGenetic VectorsOrganisms, Genetically ModifiedPlasmodium falciparumTransfectionCRISPR/Cas9Gene editingGene taggingPlasmodium falciparum

Identifiers

PMID29197418
PMCPMC5712073
OpenAlexW2772401516

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.