Evidence map›Paper›PMID 29196630›Full record

ArticleScientific reports2017

An engineered opsin monomer scrambles phospholipids.

Kalpana Pandey, Birgit Ploier, Michael A Goren, Joshua Levitz, George Khelashvili, Anant K Menon

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  11. Out-of-the-groove transport of lipids by TMEM16 and GPCR scramblases.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kalpana PandeyDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Birgit PloierDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Michael A GorenDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Joshua LevitzDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
George KhelashviliDepartment of Physiology and Biophysics, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA.
Anant K MenonDepartment of Biochemistry, Weill Cornell Medical College, 1300 York Avenue, New York, NY, 10065, USA. akm2003@med.cornell.edu.ORCID 0000-0001-6924-2698
Cornell University · US

Funding

VISION RESEARCHP30EY005722 · NEI · DUKE UNIVERSITY · PI Vadim Y Arshavsky · 1985 to 2026
$19.3M
Rhodopsin dimerization: mechanistic basis and functional consequencesR01EY027969 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI ARSHAVSKY, VADIM Y, BURNS, MARIE E · 2017 to 2020
$2.2M
Molecular Mechanisms of Synaptic G Protein-Coupled ReceptorsR35GM124731 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEVITZ, JOSHUA · 2017 to 2021
$2.1M
Rhodopsin-mediated phospholipid flippingR21EY024207 · NEI · WEILL MEDICAL COLL OF CORNELL UNIV · PI MENON, ANANT K · 2014 to 2015
$462k
NEI NIH HHS P30 EY005722NEI NIH HHS R01 EY027969NEI NIH HHS R21 EY024207NIGMS NIH HHS R35 GM124731
6 · The paper itself

Abstract

The G protein-coupled receptor opsin is a phospholipid scramblase that facilitates rapid transbilayer phospholipid exchange in liposomes. The mechanism by which opsin scrambles lipids is unknown. It has been proposed that lipid translocation may occur at protein-protein interfaces of opsin dimers. To test this possibility, we rationally engineered QUAD opsin by tryptophan substitution of four lipid-facing residues in transmembrane helix 4 (TM4) that is known to be important for dimerization. Atomistic molecular dynamics simulations of wild type and QUAD opsins combined with continuum modeling revealed that the tryptophan substitutions lower the energetically unfavorable residual hydrophobic mismatch between TM4 and the membrane, reducing the drive of QUAD opsin to dimerize. We purified thermostable wild type and QUAD opsins, with or without a SNAP tag for fluorescence labeling. Single molecule fluorescence measurements of purified SNAP-tagged constructs revealed that both proteins are monomers. Fluorescence-based activity assays indicated that QUAD opsin is a fully functional scramblase. However, unlike wild type opsin which dimerizes en route to insertion into phospholipid vesicles, QUAD opsin reconstitutes as a monomer. We conclude that an engineered opsin monomer can scramble phospholipids, and that the lipid-exposed face of TM4 is unlikely to contribute to transbilayer phospholipid exchange.

Indexed as

Models, MolecularMolecular Dynamics SimulationOpsinsPhospholipidsProtein Conformation, alpha-HelicalProtein EngineeringProtein MultimerizationSingle Molecule ImagingOpsinsPhospholipids

Identifiers

PMID29196630
PMCPMC5711885
OpenAlexW2768314095

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.