Evidence map›Paper›PMID 29196508›Full record

ArticleMolecular systems biology2017

An integrated computational and experimental study uncovers FUT9 as a metabolic driver of colorectal cancer.

Noam Auslander, Chelsea E Cunningham, Behzad M Toosi, Emily J McEwen, Keren Yizhak, Frederick S Vizeacoumar, Sreejit Parameswaran, Nir Gonen, Tanya Freywald, Kalpana K Bhanumathy and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
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  10. Systems Biology of the Cancer Cell.Annual review of biomedical engineering · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Noam AuslanderDepartment of Computer Science, Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA noamaus@gmail.com andrew.freywald@usask.ca franco.vizeacoumar@usask.ca eyruppin@gmail.com.ORCID 0000-0002-1923-8735
Chelsea E CunninghamDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Behzad M ToosiDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Emily J McEwenDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Keren YizhakBroad Institute of Harvard and MIT, Cambridge, MA, USA.
Frederick S VizeacoumarDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Sreejit ParameswaranDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Nir GonenSagol School of Neuroscience, Tel-Aviv University, Tel-Aviv, Israel.
Tanya FreywaldDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Kalpana K BhanumathyDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada.
Andrew FreywaldDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada noamaus@gmail.com andrew.freywald@usask.ca franco.vizeacoumar@usask.ca eyruppin@gmail.com.ORCID 0000-0002-2539-8444
Franco J VizeacoumarDepartment of Pathology, Cancer Cluster, College of Medicine, University of Saskatchewan, Saskatoon, SK, Canada noamaus@gmail.com andrew.freywald@usask.ca franco.vizeacoumar@usask.ca eyruppin@gmail.com.ORCID 0000-0002-6452-5207
Eytan RuppinDepartment of Computer Science, Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA noamaus@gmail.com andrew.freywald@usask.ca franco.vizeacoumar@usask.ca eyruppin@gmail.com.ORCID 0000-0002-7862-3940
University of Saskatchewan · CAUniversity of Maryland, College Park · USBroad Institute · USTel Aviv University · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolic alterations play an important role in cancer and yet, few metabolic cancer driver genes are known. Here we perform a combined genomic and metabolic modeling analysis searching for metabolic drivers of colorectal cancer. Our analysis predicts FUT9, which catalyzes the biosynthesis of Ley glycolipids, as a driver of advanced-stage colon cancer. Experimental testing reveals FUT9's complex dual role; while its knockdown enhances proliferation and migration in monolayers, it suppresses colon cancer cells expansion in tumorspheres and inhibits tumor development in a mouse xenograft models. These results suggest that FUT9's inhibition may attenuate tumor-initiating cells (TICs) that are known to dominate tumorspheres and early tumor growth, but promote bulk tumor cells. In agreement, we find that FUT9 silencing decreases the expression of the colorectal cancer TIC marker CD44 and the level of the OCT4 transcription factor, which is known to support cancer stemness. Beyond its current application, this work presents a novel genomic and metabolic modeling computational approach that can facilitate the systematic discovery of metabolic driver genes in other types of cancer.

Indexed as

AlgorithmsAnimalsCarcinogenesisCell Line, TumorColorectal NeoplasmsComputational BiologyDisease Models, AnimalFucosyltransferasesGene Knockdown TechniquesGenes, Tumor SuppressorGenomicsHumansMice, Inbred NODMice, SCIDNeoplasm InvasivenessNeoplastic Stem CellsFucosyltransferasesFUT9 protein, humancolon cancerFUT9genome‐scale metabolic modelingoncogenetumor suppressor

Identifiers

PMID29196508
PMCPMC5740504
OpenAlexW2774825874

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.