Evidence map›Paper›PMID 29194919›Full record

ArticleEnvironmental microbiology2018

A novel Chromatiales bacterium is a potential sulfide oxidizer in multiple orders of marine sponges.

Adi Lavy, Ray Keren, Ke Yu, Brian C Thomas, Lisa Alvarez-Cohen, Jillian F Banfield, Micha Ilan

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Adi LavySchool of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel Aviv, Israel.
Ray KerenSchool of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel Aviv, Israel.
Ke YuDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, USA.
Brian C ThomasEarth and Planetary Science, 369 McCone Hall, University of California, Berkeley, CA, USA.
Lisa Alvarez-CohenDepartment of Civil and Environmental Engineering, University of California, Berkeley, CA, USA.
Jillian F BanfieldEarth and Planetary Science, 369 McCone Hall, University of California, Berkeley, CA, USA.
Micha IlanSchool of Zoology, Faculty of Life Sciences, Tel-Aviv University, Tel Aviv, Israel.
Tel Aviv University · ILUniversity of California, Berkeley · USPlanetary Science Institute · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
NIEHS NIH HHS P42 ES004705
6 · The paper itself

Abstract

Sponges are benthic filter feeders that play pivotal roles in coupling benthic-pelagic processes in the oceans that involve transformation of dissolved and particulate organic carbon and nitrogen into biomass. While the contribution of sponge holobionts to the nitrogen cycle has been recognized in past years, their importance in the sulfur cycle, both oceanic and physiological, has only recently gained attention. Sponges in general, and Theonella swinhoei in particular, harbour a multitude of associated microorganisms that could affect sulfur cycling within the holobiont. We reconstructed the genome of a Chromatiales (class Gammaproteobacteria) bacterium from a metagenomic sequence dataset of a T. swinhoei-associated microbial community. This relatively abundant bacterium has the metabolic capability to oxidize sulfide yet displays reduced metabolic potential suggestive of its lifestyle as an obligatory symbiont. This bacterium was detected in multiple sponge orders, according to similarities in key genes such as 16S rRNA and polyketide synthase genes. Due to its sulfide oxidation metabolism and occurrence in many members of the Porifera phylum, we suggest naming the newly described taxon Candidatus Porisulfidus.

Indexed as

GammaproteobacteriaAnimalsGenome, BacterialIndian OceanMicrobiotaNitrogenOceans and SeasOxidation-ReductionPhylogenyPolyketide SynthasesPoriferaRNA, Ribosomal, 16SSulfidesSulfurSymbiosisNitrogenPolyketide SynthasesRNA, Ribosomal, 16SSulfidesSulfur

Identifiers

PMID29194919
PMCPMC5812793
OpenAlexW2775717041

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.