Evidence map›Paper›PMID 29194907›Full record

ArticleEnvironmental microbiology2018

100 Days of marine Synechococcus-Ruegeria pomeroyi interaction: A detailed analysis of the exoproteome.

Amandeep Kaur, Juan R Hernandez-Fernaud, Maria Del Mar Aguilo-Ferretjans, Elizabeth M Wellington, Joseph A Christie-Oleza

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Amandeep KaurSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Juan R Hernandez-FernaudSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Maria Del Mar Aguilo-FerretjansSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Elizabeth M WellingtonSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Joseph A Christie-OlezaSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
University of Warwick · GB

Funding

Biotechnology and Biological Sciences Research Council BB/L027801/1Biotechnology and Biological Sciences Research Council BB/M017982/1
6 · The paper itself

Abstract

Marine phototroph and heterotroph interactions are vital in maintaining the nutrient balance in the oceans as essential nutrients need to be rapidly cycled before sinking to aphotic layers. The aim of this study was to highlight the molecular mechanisms that drive these interactions. For this, we generated a detailed exoproteomic time-course analysis of a 100-day co-culture between the model marine picocyanobacterium Synechococcus sp. WH7803 and the Roseobacter strain Ruegeria pomeroyi DSS-3, both in nutrient-enriched and natural oligotrophic seawater. The proteomic data showed a transition between the initial growth phase and stable-state phase that, in the case of the heterotroph, was caused by a switch in motility attributed to organic matter availability. The phototroph adapted to seawater oligotrophy by reducing its selective leakiness, increasing the acquisition of essential nutrients and secreting conserved proteins of unknown function. We also report a surprisingly high abundance of extracellular superoxide dismutase produced by Synechococcus and a dynamic secretion of potential hydrolytic enzyme candidates used by the heterotroph to cleave organic groups and hydrolase polymeric organic matter produced by the cyanobacterium. The time course dataset we present here will become a reference for understanding the molecular processes underpinning marine phototroph-heterotroph interactions.

Indexed as

Coculture TechniquesHeterotrophic ProcessesMicrobial InteractionsOceans and SeasPhototrophic ProcessesProteomicsRoseobacterSeawaterSuperoxide DismutaseSynechococcusSuperoxide Dismutase

Identifiers

PMID29194907
PMCPMC5839243
OpenAlexW2771372554

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.