Evidence map›Paper›PMID 29194439›Full record

ArticlePLoS computational biology2017

Genetic drift and selection in many-allele range expansions.

Bryan T Weinstein, Maxim O Lavrentovich, Wolfram Möbius, Andrew W Murray, David R Nelson

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Navigated range expansion promotes migratory culling.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Dynamic motility selection drives population segregation in a bacterial swarm.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Physical interactions reduce the power of natural selection in growing yeast colonies.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Bryan T WeinsteinSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America.ORCID http://orcid.org/0000-0001-7065-3961
Maxim O LavrentovichDepartment of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.ORCID http://orcid.org/0000-0002-5125-7979
Wolfram MöbiusLiving Systems Institute, University of Exeter, Exeter, United Kingdom.
Andrew W MurrayFAS Center for Systems Biology, Harvard University, Cambridge, Massachusetts, United States of America.
David R NelsonSchool of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America.
Harvard University · USUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We experimentally and numerically investigate the evolutionary dynamics of four competing strains of E. coli with differing expansion velocities in radially expanding colonies. We compare experimental measurements of the average fraction, correlation functions between strains, and the relative rates of genetic domain wall annihilations and coalescences to simulations modeling the population as a one-dimensional ring of annihilating and coalescing random walkers with deterministic biases due to selection. The simulations reveal that the evolutionary dynamics can be collapsed onto master curves governed by three essential parameters: (1) an expansion length beyond which selection dominates over genetic drift; (2) a characteristic angular correlation describing the size of genetic domains; and (3) a dimensionless constant quantifying the interplay between a colony's curvature at the frontier and its selection length scale. We measure these parameters with a new technique that precisely measures small selective differences between spatially competing strains and show that our simulations accurately predict the dynamics without additional fitting. Our results suggest that the random walk model can act as a useful predictive tool for describing the evolutionary dynamics of range expansions composed of an arbitrary number of genotypes with different fitnesses.

Indexed as

AllelesEvolution, MolecularGenetic DriftModels, GeneticAlgorithmsComputational BiologyComputer SimulationEscherichia coliSelection, Genetic

Identifiers

PMID29194439
PMCPMC5728587
OpenAlexW2951267319

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.