Evidence map›Paper›PMID 29194366›Full record

ArticleNutrients2017

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization.

Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoue, Taisei Kanamoto, Jun Kikuchi

Abstract read
In one paragraph

Article in Nutrients, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  10. Article
  11. Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hideaki ShimaThe Laboratory of Microbiology, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan. shima@ac.shoyaku.ac.jp.
Shizuka MasudaThe Laboratory of Microbiology, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan. a12108@ug.shoyaku.ac.jp.
Yasuhiro DateRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. yasuhiro.date@riken.jp.ORCID 0000-0001-9645-4370
Amiu ShinoRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. amiu.shino@riken.jp.
Yuuri TsuboiRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. yuuri.tsuboi@riken.jp.
Mizuho KajikawaThe Laboratory of Microbiology, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan. kajikawa@ac.shoyaku.ac.jp.
Yoshihiro InoueLaboratory of Pharmaceutical Sciences and Education, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan. inoue@ac.shoyaku.ac.jp.
Taisei KanamotoThe Laboratory of Microbiology, Showa Pharmaceutical University, Machida, Tokyo 194-8543, Japan. kanamoto@ac.shoyaku.ac.jp.
Jun KikuchiRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. jun.kikuchi@riken.jp.ORCID 0000-0002-6809-394X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prebiotics and probiotics strongly impact the gut ecosystem by changing the composition and/or metabolism of the microbiota to improve the health of the host. However, the composition of the microbiota constantly changes due to the intake of daily diet. This shift in the microbiota composition has a considerable impact; however, non-pre/probiotic foods that have a low impact are ignored because of the lack of a highly sensitive evaluation method. We performed comprehensive acquisition of data using existing measurements (nuclear magnetic resonance, next-generation DNA sequencing, and inductively coupled plasma-optical emission spectroscopy) and analyses based on a combination of machine learning and network visualization, which extracted important factors by the Random Forest approach, and applied these factors to a network module. We used two pteridophytes,

Indexed as

FoodMachine LearningModels, BiologicalFernsGastrointestinal TractHumansMaleMicrobiotaPrebioticsProbioticsPrebioticsfood intakegut ecosystemmachine learningmetabolic responsenetwork analysis

Identifiers

PMID29194366
PMCPMC5748757

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.