Evidence map›Paper›PMID 29193386›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2018

On the Structure and Reaction Mechanism of Human Acireductone Dioxygenase.

Anna Miłaczewska, Ewa Kot, José A Amaya, Thomas M Makris, Marcin Zając, Józef Korecki, Aleksandr Chumakov, Bartosz Trzewik, Sylwia Kędracka-Krok, Władek Minor and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

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  10. Structure, function, and biosynthesis of nickel-dependent enzymes.Protein science : a publication of the Protein Society · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Anna MiłaczewskaJerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland.
Ewa KotJerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland.ORCID http://orcid.org/0000-0001-9427-8123
José A AmayaUniversity of South Carolina, Department of Chemistry and Biochemistry, 631 Sumter Street, Columbia, SC, 29208, USA.
Thomas M MakrisUniversity of South Carolina, Department of Chemistry and Biochemistry, 631 Sumter Street, Columbia, SC, 29208, USA.
Marcin ZającNational Synchrotron Radiation Centre Solaris, Jagiellonian University, ul. Czerwone Maki 98, 30-392, Kraków, Poland.
Józef KoreckiJerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland.
Aleksandr ChumakovEuropean Synchrotron Radiation Facility (ESRF), P.O. Box 220, F-, 38043, Grenoble, France.
Bartosz TrzewikJagiellonian University, Faculty of Chemistry, ul. Romana Ingardena 3, 30-060, Kraków, Poland.
Sylwia Kędracka-KrokDepartment of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Krakow, Poland.
Władek MinorUniversity of Virginia, Department of Molecular Physiology and Biological Physics, 1340 Jefferson Park Avenue, Charlottesville, VA, 22908, USA.
Maksymilian ChruszczUniversity of South Carolina, Department of Chemistry and Biochemistry, 631 Sumter Street, Columbia, SC, 29208, USA.
Tomasz BorowskiJerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland.ORCID http://orcid.org/0000-0002-3450-3576
Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences · PLJagiellonian University · PLUniversity of South Carolina Sumter · USEuropean Synchrotron Radiation Facility · FRUniversity of Virginia · US

Funding

Integrated resource for reproducibility in macromolecular crystallographyU01HG008424 · NHGRI · UNIVERSITY OF VIRGINIA · PI MINOR, WLADEK · 2015 to 2017
$1.5M
Metal binding sites in macromolecular structuresR01GM117325 · NIGMS · UNIVERSITY OF VIRGINIA · PI MINOR, WLADEK · 2016 to 2019
$1.3M
NHGRI NIH HHS U01 HG008424NIGMS NIH HHS R01 GM117325
6 · The paper itself

Abstract

Acireductone dioxygenase (ARD) is an intriguing enzyme from the methionine salvage pathway that is capable of catalysing two different oxidation reactions with the same substrate depending on the type of the metal ion in the active site. To date, the structural information regarding the ARD-acireductone complex is limited and possible reaction mechanisms are still under debate. The results of joint experimental and computational studies undertaken to advance knowledge about ARD are reported. The crystal structure of an ARD from Homo sapiens was determined with selenomethionine. EPR spectroscopy suggested that binding acireductone triggers one protein residue to dissociate from Fe

Indexed as

CatalysisCatalytic DomainDioxygenasesHumansIonsIronModels, MolecularOxidation-ReductionProtein BindingProtein ConformationSelenomethionineSignal Transductionaci-reductone oxidase (CO-forming)DioxygenasesIonsIronquercetin 2,3-dioxygenaseSelenomethionineacireductone dioxygenaseEPR spectroscopyMössbauer spectroscopyprotein structuresreaction mechanisms

Identifiers

PMID29193386
PMCPMC7883896
OpenAlexW2802566642

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.