Evidence map›Paper›PMID 29192299›Full record

ReviewLab on a chip2018

Machine learning to detect signatures of disease in liquid biopsies - a user's guide.

Jina Ko, Steven N Baldassano, Po-Ling Loh, Konrad Kording, Brian Litt, David Issadore

Abstract readReview
In one paragraph

Review in Lab on a chip, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Progress and application of lung-on-a-chip for lung cancer.Frontiers in bioengineering and biotechnology · 2024
    Review
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jina KoDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania, USA. daveissadore@gmail.com.
Steven N Baldassano
Po-Ling Loh
Konrad Kording
Brian Litt
David Issadore

Funding

Neurophysiologically Based Brain State Tracking & Modulation in Focal EpilepsyUH2NS095495 · NINDS · MAYO CLINIC ROCHESTER · PI WORRELL, GREGORY A · 2015 to 2018
$4.2M
Training Program in Neuroengineering and MedicineT32NS091006 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Brian Litt · 2015 to 2026
$4.1M
Virtual Resection to Treat EpilepsyR01NS099348 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BASSETT, DANIELLE SMITH, LITT, BRIAN · 2016 to 2019
$2.3M
A nanomagnetic platform technology to characterize traumatic brain injury using brain derived extracellular vesiclesR33MH118170 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2020 to 2022
$1.7M
Nanomagnetic isolation and sensing for mobile HIV-1 self-testingR61AI147406 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2019 to 2021
$1.4M
Rapid unbiased isolation and in situ RNA analysis of circulating tumor cells using a magnetic micropore-based diagnostic chipR33CA206907 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2017 to 2019
$1.1M
A micro Hall chip for circulating microvesicle based cancer monitoringR21CA182336 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2014 to 2016
$664k
NCI NIH HHS R21 CA182336NCI NIH HHS R33 CA206907NIAID NIH HHS R61 AI147406NIMH NIH HHS R33 MH118170NINDS NIH HHS R01 NS099348NINDS NIH HHS T32 NS091006NINDS NIH HHS UH2 NS095495
6 · The paper itself

Abstract

New technologies that measure sparse molecular biomarkers from easily accessible bodily fluids (e.g. blood, urine, and saliva) are revolutionizing disease diagnostics and precision medicine. Microchip devices can measure more disease biomarkers with better sensitivity and specificity each year, but clinical interpretation of these biomarkers remains a challenge. Single biomarkers in 'liquid biopsy' often cannot accurately predict the state of a disease due to heterogeneity in phenotype and disease expression across individuals. To address this challenge, investigators are combining multiplexed measurements of different biomarkers that together define robust signatures for specific disease states. Machine learning is a useful tool to automatically discover and detect these signatures, especially as new technologies output increasing quantities of molecular data. In this paper, we review the state of the field of machine learning applied to molecular diagnostics and provide practical guidance to use this tool effectively and to avoid common pitfalls.

Indexed as

Diagnosis, Computer-AssistedLiquid BiopsyMachine LearningMolecular Diagnostic TechniquesAlgorithmsBiomarkersCluster AnalysisDatabases, FactualHumansBiomarkers

Identifiers

PMID29192299
PMCPMC5955608

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.