Evidence map›Paper›PMID 29192133›Full record

ArticleScience (New York, N.Y.)2017

Synthetic transcription elongation factors license transcription across repressive chromatin.

Graham S Erwin, Matthew P Grieshop, Asfa Ali, Jun Qi, Matthew Lawlor, Deepak Kumar, Istaq Ahmad, Anna McNally, Natalia Teider, Katie Worringer and 12 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
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  4. Activating p53Nature communications · 2026
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  7. Induced proximity-based therapeutic modalities.Nature reviews. Drug discovery · 2026
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  9. Optimizing multifunctional fluorescent ligands for intracellular labeling.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Review
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  13. Review
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  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Gene regulation technologies for gene and cell therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 3 countries.

Graham S ErwinDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Matthew P GrieshopDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0002-0075-8597
Asfa AliDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Jun QiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-1461-3356
Matthew LawlorDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0003-0700-5763
Deepak KumarDepartment of Neurology, All India Institute of Medical Sciences, New Delhi, India.
Istaq AhmadDepartment of Neurology, All India Institute of Medical Sciences, New Delhi, India.ORCID 0000-0001-8201-0381
Anna McNallyNovartis Institutes for BioMedical Research (NIBR), Cambridge, MA 02139, USA.ORCID 0000-0002-7069-4920
Natalia TeiderNovartis Institutes for BioMedical Research (NIBR), Cambridge, MA 02139, USA.
Katie WorringerNovartis Institutes for BioMedical Research (NIBR), Cambridge, MA 02139, USA.ORCID 0000-0001-7807-2344
Rajeev SivasankaranNovartis Institutes for BioMedical Research (NIBR), Cambridge, MA 02139, USA.
Deeba N SyedDepartment of Dermatology, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0001-6948-5817
Asuka EguchiDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0003-3010-0275
Md AshrafDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Justin JefferySmall Animal Imaging Facility, University of Wisconsin Carbone Cancer Center, Madison, WI 53792, USA.
Mousheng XuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Paul M C ParkDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Hasan MukhtarDepartment of Dermatology, University of Wisconsin-Madison, Madison, WI 53706, USA.
Achal K SrivastavaDepartment of Neurology, All India Institute of Medical Sciences, New Delhi, India.
Mohammed FaruqGenomics and Molecular Medicine, Council of Scientific and Industrial Research (CSIR)-Institute of Genomics and Integrative Biology (IGIB), New Delhi, India.
James E BradnerDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0003-1422-5318
Aseem Z AnsariDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. azansari@wisc.edu.ORCID 0000-0003-1432-4498
University of Wisconsin–Madison · USNovartis (China) · CNDana-Farber Cancer Institute · USInstitute of Genomics and Integrative Biology · INAll India Institute of Medical Sciences · INUniversity of Wisconsin Carbone Cancer Center · US

Funding

UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Christian Capitini · 1985 to 2026
$142.6M
GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
Midwest Progenitor Cell ConsortiumU01HL099773 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI THOMSON, JAMES ALEXANDER · 2009 to 2015
$7.8M
Skin Diseases Research Center at the University of WisconsinP30AR066524 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI WOOD, GARY S · 2014 to 2018
$2.6M
Targeting Leukemia causing oncogene E2a-Pbx1 with synthetic moleculesR01CA133508 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI ANSARI, ASEEM Z · 2008 to 2012
$1.5M
Deciphering the molecular and physiological cues that guide CTD patterning by Bur1/Cdk9R01GM117362 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ANSARI, ASEEM Z · 2016 to 2019
$1.3M
NCI NIH HHS P30 CA014520NCI NIH HHS R01 CA133508NHLBI NIH HHS U01 HL099773NIAMS NIH HHS P30 AR066524NIGMS NIH HHS R01 GM117362NIGMS NIH HHS T32 GM007215
6 · The paper itself

Abstract

The release of paused RNA polymerase II into productive elongation is highly regulated, especially at genes that affect human development and disease. To exert control over this rate-limiting step, we designed sequence-specific synthetic transcription elongation factors (Syn-TEFs). These molecules are composed of programmable DNA-binding ligands flexibly tethered to a small molecule that engages the transcription elongation machinery. By limiting activity to targeted loci, Syn-TEFs convert constituent modules from broad-spectrum inhibitors of transcription into gene-specific stimulators. Here we present Syn-TEF1, a molecule that actively enables transcription across repressive GAA repeats that silence frataxin expression in Friedreich's ataxia, a terminal neurodegenerative disease with no effective therapy. The modular design of Syn-TEF1 defines a general framework for developing a class of molecules that license transcription elongation at targeted genomic loci.

Indexed as

Transcriptional ActivationChromatinFrataxinFriedreich AtaxiaGene SilencingHumansIron-Binding ProteinsRNA Polymerase IITranscriptional Elongation FactorsTranscription, GeneticChromatinFrataxinIron-Binding ProteinsRNA Polymerase IITranscriptional Elongation Factors

Identifiers

PMID29192133
PMCPMC6037176
OpenAlexW2775795482

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.