Evidence map›Paper›PMID 29192060›Full record

ArticleJournal of cell science2018

High-content tripartite split-GFP cell-based assays to screen for modulators of small GTPase activation.

Faten Koraïchi, Rémi Gence, Catherine Bouchenot, Sarah Grosjean, Isabelle Lajoie-Mazenc, Gilles Favre, Stéphanie Cabantous

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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  8. Frontiers in cell and developmental biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Faten KoraïchiCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France.ORCID 0000-0002-8636-6411
Rémi GenceCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France.
Catherine BouchenotCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France.
Sarah GrosjeanCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France.ORCID 0000-0003-3026-4720
Isabelle Lajoie-MazencCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France.
Gilles FavreCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France stephanie.cabantous@inserm.fr favre.gilles@iuct-oncopole.fr.ORCID 0000-0002-2344-1883
Stéphanie CabantousCancer Research Center of Toulouse, INSERM U1037, 31037 Toulouse, France stephanie.cabantous@inserm.fr favre.gilles@iuct-oncopole.fr.ORCID 0000-0002-8406-9421
Inserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human Ras superfamily of small GTPases controls essential cellular processes such as gene expression and cell proliferation. As their deregulation is widely associated with human cancer, small GTPases and their regulatory proteins have become increasingly attractive for the development of novel therapeutics. Classical methods to monitor GTPase activation include pulldown assays that limit the analysis of GTP-bound form of proteins from cell lysates. Alternatively, live-cell FRET biosensors may be used to study GTPase activation dynamics in response to stimuli, but these sensors often require further optimization for high-throughput applications. Here, we describe a cell-based approach that is suitable to monitor the modulation of small GTPase activity in a high-content analysis. The assay relies on a genetically encoded tripartite split-GFP (triSFP) system that we integrated in an optimized cellular model to monitor modulation of RhoA and RhoB GTPases. Our results indicate the robust response of the reporter, allowing the interrogation of inhibition and stimulation of Rho activity, and highlight potential applications of this method to discover novel modulators and regulators of small GTPases and related protein-binding domains.

Indexed as

High-Throughput Screening AssaysGenetic VectorsGreen Fluorescent ProteinsGTP Phosphohydrolase ActivatorsGuanine Nucleotide Exchange FactorsHEK293 CellsHumansProtein BindingProtein Interaction MappingrhoA GTP-Binding ProteinrhoB GTP-Binding ProteinGreen Fluorescent ProteinsGTP Phosphohydrolase ActivatorsGuanine Nucleotide Exchange FactorsrhoA GTP-Binding ProteinrhoB GTP-Binding ProteinCell-based assaysGEFGTPase activationGuanine nucleotide exchange factorHigh-content analysisProtein–protein interactionSplit-GFP

Identifiers

PMID29192060
PMCPMC5818064
OpenAlexW2772868043

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.