Evidence map›Paper›PMID 29191787›Full record

ArticleMetabolic engineering2018

Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells.

Emanuel Gonçalves, Marco Sciacovelli, Ana S H Costa, Maxine Gia Binh Tran, Timothy Isaac Johnson, Daniel Machado, Christian Frezza, Julio Saez-Rodriguez

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Metabolic engineering, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

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  20. Fumarate hydratase in cancer: A multifaceted tumour suppressor.Seminars in cell & developmental biology · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 3 countries.

Emanuel GonçalvesEuropean Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Wellcome Genome Campus, Cambridge CB10 1SD, UK.
Marco SciacovelliMedical Research Council Cancer Unit, University of Cambridge, Cambridge CB2 0XZ, UK.
Ana S H CostaMedical Research Council Cancer Unit, University of Cambridge, Cambridge CB2 0XZ, UK.
Maxine Gia Binh TranUCL Division of Surgery and Interventional Science, Specialist Center for Kidney Cancer, Royal Free Hospital, Pond Street, London NW3 2QG, UK.
Timothy Isaac JohnsonMedical Research Council Cancer Unit, University of Cambridge, Cambridge CB2 0XZ, UK.
Daniel MachadoEuropean Molecular Biology Laboratory, EMBL, Heidelberg, Germany; Centre of Biological Engineering, University of Minho, Braga, Portugal.
Christian FrezzaMedical Research Council Cancer Unit, University of Cambridge, Cambridge CB2 0XZ, UK. Electronic address: CF366@mrc-cu.cam.ac.uk.
Julio Saez-RodriguezRWTH Aachen University, Faculty of Medicine, Joint Research Center for Computational Biomedicine, Aachen, Germany. Electronic address: saezrodriguez@gmail.com.
Medical Research Council · GBUniversity of Cambridge · GBEuropean Bioinformatics Institute · GBRWTH Aachen University · DEUniversity College London · GBUniversity of Minho · PT

Funding

Medical Research Council MC_UU_12022/6
6 · The paper itself

Abstract

Deregulated signal transduction and energy metabolism are hallmarks of cancer and both play a fundamental role in tumorigenesis. While it is increasingly recognised that signalling and metabolism are highly interconnected, the underpinning mechanisms of their co-regulation are still largely unknown. Here we designed and acquired proteomics, phosphoproteomics, and metabolomics experiments in fumarate hydratase (FH) deficient cells and developed a computational modelling approach to identify putative regulatory phosphorylation-sites of metabolic enzymes. We identified previously reported functionally relevant phosphosites and potentially novel regulatory residues in enzymes of the central carbon metabolism. In particular, we showed that pyruvate dehydrogenase (PDHA1) enzymatic activity is inhibited by increased phosphorylation in FH-deficient cells, restricting carbon entry from glucose to the tricarboxylic acid cycle. Moreover, we confirmed PDHA1 phosphorylation in human FH-deficient tumours. Our work provides a novel approach to investigate how post-translational modifications of enzymes regulate metabolism and could have important implications for understanding the metabolic transformation of FH-deficient cancers with potential clinical applications.

Indexed as

Neoplasm ProteinsNeoplasmsProtein Processing, Post-TranslationalPyruvate Dehydrogenase (Lipoamide)Cell Line, TumorFumarate HydrataseHumansFumarate HydrataseNeoplasm Proteinspyruvate dehydrogenase E1alpha subunitPyruvate Dehydrogenase (Lipoamide)CancerMetabolismModellingPhosphoproteomics

Identifiers

PMID29191787
PMCPMC5805855
OpenAlexW2626543581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.