Evidence map›Paper›PMID 29191733›Full record

ReviewBiochimica et biophysica acta. Gene regulatory mechanisms2018

tRNA dynamics between the nucleus, cytoplasm and mitochondrial surface: Location, location, location.

Kunal Chatterjee, Regina T Nostramo, Yao Wan, Anita K Hopper

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta. Gene regulatory mechanisms, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Article
  3. Biochemical and structural insights into a 5' to 3' RNA ligase reveal a potential role in tRNA ligation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  11. Targeting NMolecular therapy : the journal of the American Society of Gene Therapy · 2023
    Article
  12. Article
  13. A Simple Method for the Detection of Wybutosine-Modified tRNAMethods in molecular biology (Clifton, N.J.) · 2023
    Article
  14. Article
  15. Article
  16. Regulation of Archease by the mTOR-vATPase axis.Development (Cambridge, England) · 2022
    Article
  17. Article
  18. Review
  19. Therapeutic promise of engineered nonsense suppressor tRNAs.Wiley interdisciplinary reviews. RNA · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kunal ChatterjeeThe Ohio State University Comprehensive Cancer Research Center, United States; Department of Molecular Genetics, The Ohio State University, United States; Center for RNA Biology, The Ohio State University, United States.
Regina T NostramoDepartment of Molecular Genetics, The Ohio State University, United States; Center for RNA Biology, The Ohio State University, United States.
Yao WanThe Ohio State University Comprehensive Cancer Research Center, United States; Department of Molecular Genetics, The Ohio State University, United States; Center for RNA Biology, The Ohio State University, United States.
Anita K HopperDepartment of Molecular Genetics, The Ohio State University, United States; Center for RNA Biology, The Ohio State University, United States. Electronic address: hopper.64@osu.edu.
The Ohio State University · USCancer Research Center · US

Funding

YEAST GENES IN RNA PROCESSING &NUCLEUS/CYTOSOL EXCHANGER01GM027930 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HOPPER, ANITA K · 1985 to 2014
$4.6M
tRNA processing and nuclear-cytoplasmic dynamicsR01GM122884 · NIGMS · OHIO STATE UNIVERSITY · PI HOPPER, ANITA K · 2017 to 2024
$2.7M
NIGMS NIH HHS R01 GM027930NIGMS NIH HHS R01 GM122884
6 · The paper itself

Abstract

Although tRNAs participate in the essential function of protein translation in the cytoplasm, tRNA transcription and numerous processing steps occur in the nucleus. This subcellular separation between tRNA biogenesis and function requires that tRNAs be efficiently delivered to the cytoplasm in a step termed "primary tRNA nuclear export". Surprisingly, tRNA nuclear-cytoplasmic traffic is not unidirectional, but, rather, movement is bidirectional. Cytoplasmic tRNAs are imported back to the nucleus by the "tRNA retrograde nuclear import" step which is conserved from budding yeast to vertebrate cells and has been hijacked by viruses, such as HIV, for nuclear import of the viral reverse transcription complex in human cells. Under appropriate environmental conditions cytoplasmic tRNAs that have been imported into the nucleus return to the cytoplasm via the 3rd nuclear-cytoplasmic shuttling step termed "tRNA nuclear re-export", that again is conserved from budding yeast to vertebrate cells. We describe the 3 steps of tRNA nuclear-cytoplasmic movements and their regulation. There are multiple tRNA nuclear export and import pathways. The different tRNA nuclear exporters appear to possess substrate specificity leading to the tantalizing possibility that the cellular proteome may be regulated at the level of tRNA nuclear export. Moreover, in some organisms, such as budding yeast, the pre-tRNA splicing heterotetrameric endonuclease (SEN), which removes introns from pre-tRNAs, resides on the cytoplasmic surface of the mitochondria. Therefore, we also describe the localization of the SEN complex to mitochondria and splicing of pre-tRNA on mitochondria, which occurs prior to the participation of tRNAs in protein translation. This article is part of a Special Issue entitled: SI: Regulation of tRNA synthesis and modification in physiological conditions and disease edited by Dr. Boguta Magdalena.

Indexed as

AnimalsBiological TransportCell NucleusCytoplasmEndoribonucleasesEvolution, MolecularFungal ProteinsHSP70 Heat-Shock ProteinsMitochondrial MembranesNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsPlant ProteinsRNA-Binding ProteinsRNA PrecursorsRNA Processing, Post-TranscriptionalRNA, TransferEndoribonucleasesFungal ProteinsHSP70 Heat-Shock ProteinsMTR10 protein, S cerevisiaeNuclear Pore Complex ProteinsNucleocytoplasmic Transport ProteinsPlant ProteinsRNA-Binding ProteinsRNA PrecursorsRNA, TransferSaccharomyces cerevisiae ProteinsSSA2 protein, S cerevisiae

Identifiers

PMID29191733
PMCPMC5882565
OpenAlexW2768762471

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.