Evidence map›Paper›PMID 29191166›Full record

ArticleBMC genomics2017

The insect pathogenic bacterium Xenorhabdus innexi has attenuated virulence in multiple insect model hosts yet encodes a potent mosquitocidal toxin.

Il-Hwan Kim, Sudarshan K Aryal, Dariush T Aghai, Ángel M Casanova-Torres, Kai Hillman, Michael P Kozuch, Erin J Mans, Terra J Mauer, Jean-Claude Ogier, Jerald C Ensign and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 49 citations in OpenAlex.

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  14. Insects · 2021
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  17. Fabclavine diversity inBeilstein journal of organic chemistry · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Il-Hwan KimDepartment of Entomology, University of Wisconsin-Madison, Madison, WI, USA.
Sudarshan K AryalDepartment of Nematology, University of California, Riverside, CA, USA.
Dariush T AghaiDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Ángel M Casanova-TorresDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Kai HillmanDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Michael P KozuchDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Erin J MansDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Terra J MauerDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Jean-Claude OgierDGIMI, INRA, Université de Montpellier, 34095, Montpellier, France.
Jerald C EnsignDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
Sophie GaudriaultDGIMI, INRA, Université de Montpellier, 34095, Montpellier, France.
Walter G GoodmanDepartment of Entomology, University of Wisconsin-Madison, Madison, WI, USA.
Heidi Goodrich-BlairDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA. hgblair@utk.edu.ORCID http://orcid.org/0000-0003-1934-2636
Adler R DillmanDepartment of Nematology, University of California, Riverside, CA, USA. adlerd@ucr.edu.
University of Wisconsin–Madison · USUniversité de Montpellier · FRUniversity of California, Riverside · US

Funding

GRADUATE TRAINING IN MOLECULAR BIOSCIENCEST32GM007215 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HULL, CHRISTINA M · 1985 to 2018
$22.5M
The role of fatty acid- and retinol-binding proteins in parasitic nematode infections.K22AI119155 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI DILLMAN, ADLER RAY · 2015 to 2016
$269k
Cooperative State Research, Education, and Extension Service (US) WIS01582Division of Integrative Organismal Systems IOS-1353674National Institute of Allergy and Infectious Diseases AI119155National Institute of General Medical Sciences T32-GM07215NIAID NIH HHS K22 AI119155NIGMS NIH HHS T32 GM007215University of Tennessee Knoxville E01-1012-144University of Wisconsin-Madison Advance Opportunity Fellowship
6 · The paper itself

Abstract

backgroundXenorhabdus innexi is a bacterial symbiont of Steinernema scapterisci nematodes, which is a cricket-specialist parasite and together the nematode and bacteria infect and kill crickets. Curiously, X. innexi expresses a potent extracellular mosquitocidal toxin activity in culture supernatants. We sequenced a draft genome of X. innexi and compared it to the genomes of related pathogens to elucidate the nature of specialization.

resultsUsing green fluorescent protein-expressing X. innexi we confirm previous reports using culture-dependent techniques that X. innexi colonizes its nematode host at low levels (~3-8 cells per nematode), relative to other Xenorhabdus-Steinernema associations. We found that compared to the well-characterized entomopathogenic nematode symbiont X. nematophila, X. innexi fails to suppress the insect phenoloxidase immune pathway and is attenuated for virulence and reproduction in the Lepidoptera Galleria mellonella and Manduca sexta, as well as the dipteran Drosophila melanogaster. To assess if, compared to other Xenorhabdus spp., X. innexi has a reduced capacity to synthesize virulence determinants, we obtained and analyzed a draft genome sequence. We found no evidence for several hallmarks of Xenorhabdus spp. toxicity, including Tc and Mcf toxins. Similar to other Xenorhabdus genomes, we found numerous loci predicted to encode non-ribosomal peptide/polyketide synthetases. Anti-SMASH predictions of these loci revealed one, related to the fcl locus that encodes fabclavines and zmn locus that encodes zeamines, as a likely candidate to encode the X. innexi mosquitocidal toxin biosynthetic machinery, which we designated Xlt. In support of this hypothesis, two mutants each with an insertion in an Xlt biosynthesis gene cluster lacked the mosquitocidal compound based on HPLC/MS analysis and neither produced toxin to the levels of the wild type parent.

conclusionsThe X. innexi genome will be a valuable resource in identifying loci encoding new metabolites of interest, but also in future comparative studies of nematode-bacterial symbiosis and niche partitioning among bacterial pathogens.

Indexed as

Host-Pathogen InteractionsAedesAnimalsBacterial ProteinsBacterial ToxinsDrosophila melanogasterGenome, BacterialGreen Fluorescent ProteinsLepidopteraMalePhylogenyQuantitative Trait LociSymbiosisTylenchidaVirulenceVirulence FactorsBacterial ProteinsBacterial ToxinsGreen Fluorescent ProteinsVirulence FactorsImmunityInsectLipopeptideMosquitoNRPS/PKSSymbiosisToxinVirulence

Identifiers

PMID29191166
PMCPMC5709968
OpenAlexW2773006914

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.