Evidence map›Paper›PMID 29191157›Full record

ArticleBMC genomics2017

Genome-wide analysis of the Solanum tuberosum (potato) trehalose-6-phosphate synthase (TPS) gene family: evolution and differential expression during development and stress.

Yingchun Xu, Yanjie Wang, Neil Mattson, Liu Yang, Qijiang Jin

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 66 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yingchun XuCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
Yanjie WangCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China.
Neil MattsonHorticulture Section, School of Integrative Plant Science, Cornell University, 134A Plant Science Bldg, Ithaca, NY, 14853, USA.
Liu YangInstitute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, 210095, China.
Qijiang JinCollege of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China. jqj@njau.edu.cn.
Nanjing Agricultural University · CNCornell University · USInstitute of Plant Protection · CN

Funding

China Postdoctoral Science Foundation funded project 2014M560432, 2015T80563National Natural Science Foundation of China 31501610National Natural Science Foundation of China 31501795the fundamental research funds for the central universities KJQN201659the Natural Science Foundation of Jiangsu Province in China BK20140695
6 · The paper itself

Abstract

backgroundTrehalose-6-phosphate synthase (TPS) serves important functions in plant desiccation tolerance and response to environmental stimuli. At present, a comprehensive analysis, i.e. functional classification, molecular evolution, and expression patterns of this gene family are still lacking in Solanum tuberosum (potato).

resultsIn this study, a comprehensive analysis of the TPS gene family was conducted in potato. A total of eight putative potato TPS genes (StTPSs) were identified by searching the latest potato genome sequence. The amino acid identity among eight StTPSs varied from 59.91 to 89.54%. Analysis of d

conclusionsThis study provides a reference for genome-wide identification of the potato TPS gene family and sets a framework for further functional studies of this important gene family in development and stress response.

Indexed as

Evolution, MolecularGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenes, PlantGlucosyltransferasesMultigene FamilySequence Analysis, DNASolanum tuberosumStress, PhysiologicalGlucosyltransferasestrehalose-6-phosphate synthaseexpression profilinggene familySolanum tuberosumTrehalose-6-phosphate synthase

Identifiers

PMID29191157
PMCPMC5710090
OpenAlexW2771896325

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.