Evidence map›Paper›PMID 29190272›Full record

ArticleNature methods2017

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data.

David Sehnal, Mandar Deshpande, Radka Svobodová Vařeková, Saqib Mir, Karel Berka, Adam Midlik, Lukáš Pravda, Sameer Velankar, Jaroslav Koča

Abstract readLetter
PubMed Publisher
In one paragraph

Article in Nature methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Mol* web molecular graphics engine.Protein science : a publication of the Protein Society · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Mesoscale explorer: Visual exploration of large-scale molecular models.Protein science : a publication of the Protein Society · 2024
    Article
  12. Mesoscale Explorer - Visual Exploration of Large-Scale Molecular Models.bioRxiv : the preprint server for biology · 2024
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Using FPbase: The Fluorescent Protein Database.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  19. Article
  20. RNAloops: a database of RNA multiloops.Bioinformatics (Oxford, England) · 2022
    Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David SehnalCEITEC, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID 0000-0002-0682-3089
Mandar DeshpandeProtein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.ORCID 0000-0002-9043-7665
Radka Svobodová VařekováCEITEC, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Saqib MirProtein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.
Karel BerkaRegional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University, Olomouc, Czech Republic.ORCID 0000-0001-9472-2589
Adam MidlikCEITEC, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Lukáš PravdaCEITEC, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.ORCID 0000-0002-6435-4719
Sameer VelankarProtein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.ORCID 0000-0002-8439-5964
Jaroslav KočaCEITEC, Central European Institute of Technology, Masaryk University, Brno, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Datasets as TopicModels, MolecularWeb BrowserBinding SitesCryoelectron MicroscopyHumansInternetLigandsMacromolecular SubstancesUser-Computer InterfaceLigandsMacromolecular Substances

Identifiers

PMID29190272

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.