Evidence map›Paper›PMID 29188374›Full record

ArticlePlanta2018

Characterization of a gene regulatory network underlying astringency loss in persimmon fruit.

Soichiro Nishiyama, Noriyuki Onoue, Atsushi Kono, Akihiko Sato, Keizo Yonemori, Ryutaro Tao

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Distinct Transcriptomic Profile Underlying High COCurrent issues in molecular biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Soichiro NishiyamaGraduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan.ORCID http://orcid.org/0000-0002-3451-6166
Noriyuki OnoueInstitute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Akitsu, Higashihiroshima, Hiroshima, 739-2494, Japan.
Atsushi KonoInstitute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Akitsu, Higashihiroshima, Hiroshima, 739-2494, Japan.
Akihiko SatoInstitute of Fruit Tree and Tea Science, National Agriculture and Food Research Organization (NARO), Akitsu, Higashihiroshima, Hiroshima, 739-2494, Japan.
Keizo YonemoriFaculty of Agriculture, Ryukoku University, Seta Oe-cho, Otsu, 520-2194, Japan.
Ryutaro TaoGraduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto, 606-8502, Japan. rtao@kais.kyoto-u.ac.jp.
National Agriculture and Food Research Organization · JPKyoto University · JPRyukoku University · JP

Funding

Japan Society for the Promotion of Science JP16H04876Japan Society for the Promotion of Science JP16J10408
6 · The paper itself

Abstract

MAIN

conclusionTranscriptome analysis of a persimmon population segregating for an astringency trait in fruit suggested central roles for a limited number of transcriptional regulators in the loss of proanthocyanidin accumulation. Persimmon (Diospyros kaki; 2n = 6x = 90) accumulates a large amount of proanthocyanidins (PAs) in its fruit, resulting in an astringent taste. Persimmon cultivars are classified into four types based on the nature of astringency loss and the amount of PAs at maturity. Pollination constant and non-astringent (PCNA)-type cultivars stop accumulating PAs in the early stages of fruit development and their fruit can be consumed when still firm without the need for artificial deastringency treatments. While the PCNA trait has been shown to be conferred by a recessive allele at a single locus (ASTRINGENCY; AST), the exact genetic determinant remains unidentified. Here, we conducted transcriptome analyses to elucidate the regulatory mechanism underlying this trait using developing fruits of an F

Indexed as

DiospyrosFruitGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksGenes, PlantProanthocyanidinsSequence AlignmentSequence Analysis, DNAproanthocyanidinProanthocyanidinsAbiotic stressCoexpression network analysisDiospyros kakiFruit transcriptomeProanthocyanidins

Identifiers

PMID29188374
OpenAlexW2770052934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.