Evidence map›Paper›PMID 29188115›Full record

ArticleBiomedical optics express2017

Raman spectral post-processing for oral tissue discrimination - a step for an automatized diagnostic system.

Luis Felipe C S Carvalho, Marcelo Saito Nogueira, Lázaro P M Neto, Tanmoy T Bhattacharjee, Airton A Martin

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Biomedical optics express, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Luis Felipe C S CarvalhoUnivap/Instituto de Pesquisa e Desenvolvimento, Laboratório de Espectroscopia Vibracional Biomédica, Avenida Shishima Hifumi, 2911, São José dos Campos/SP, CEP: 12244-000, Brazil.
Marcelo Saito NogueiraUniversidade de São Paulo/ São Carlos Institute of Physics, Optics Group, Biophotonics Division, Avenida Trabalhador São Carlense, 400, São Carlos/SP, CEP: 13566-590, Brazil.
Lázaro P M NetoUnivap/Instituto de Pesquisa e Desenvolvimento, Laboratório de Espectroscopia Vibracional Biomédica, Avenida Shishima Hifumi, 2911, São José dos Campos/SP, CEP: 12244-000, Brazil.
Tanmoy T BhattacharjeeUnivap/Instituto de Pesquisa e Desenvolvimento, Laboratório de Espectroscopia Vibracional Biomédica, Avenida Shishima Hifumi, 2911, São José dos Campos/SP, CEP: 12244-000, Brazil.
Airton A MartinBiomedical Engineering Innovation Center - Biomedical Vibrational Spectroscopy Group, Universidade Brasil - UnBr - Rua Carolina Fonseca, 235 - 08230-030 - Itaquera, São Paulo/SP/ Visiting Professor Universidade Federal do Piauí - UFPI - Campus Ministro Petrônio Portella Departamento de Física - CCN Bairro Ininga Teresina, PI, CEP: 64049-550, Brazil.
Universidade de São Paulo · BRUniversidade Federal do Piauí · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most oral injuries are diagnosed by histopathological analysis of a biopsy, which is an invasive procedure and does not give immediate results. On the other hand, Raman spectroscopy is a real time and minimally invasive analytical tool with potential for the diagnosis of diseases. The potential for diagnostics can be improved by data post-processing. Hence, this study aims to evaluate the performance of preprocessing steps and multivariate analysis methods for the classification of normal tissues and pathological oral lesion spectra. A total of 80 spectra acquired from normal and abnormal tissues using optical fiber Raman-based spectroscopy (OFRS) were subjected to PCA preprocessing in the z-scored data set, and the KNN (K-nearest neighbors), J48 (unpruned C4.5 decision tree), RBF (radial basis function), RF (random forest), and MLP (multilayer perceptron) classifiers at WEKA software (Waikato environment for knowledge analysis), after area normalization or maximum intensity normalization. Our results suggest the best classification was achieved by using maximum intensity normalization followed by MLP. Based on these results, software for automated analysis can be generated and validated using larger data sets. This would aid quick comprehension of spectroscopic data and easy diagnosis by medical practitioners in clinical settings.

Indexed as

(120.3890) Medical optics instrumentation(120.6200) Spectrometers and spectroscopic instrumentation(170.1610) Clinical applications(200.4560) Optical data processing(300.6330) Spectroscopy, inelastic scattering including Raman

Identifiers

PMID29188115
PMCPMC5695965
OpenAlexW4236518215

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.