Evidence map›Paper›PMID 29187540›Full record

ArticleJournal of virology2018

General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins.

Jonathan M Wagner, Devin E Christensen, Akash Bhattacharya, Daria M Dawidziak, Marcin D Roganowicz, Yueping Wan, Ruth A Pumroy, Borries Demeler, Dmitri N Ivanov, Barbie K Ganser-Pornillos and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Cyclophilin A Regulates Tripartite Motif 5 Alpha Restriction of HIV-1.International journal of molecular sciences · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Restriction of HIV-1 and other retroviruses by TRIM5.Nature reviews. Microbiology · 2019
    Review
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jonathan M WagnerDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
Devin E ChristensenDepartment of Biochemistry, University of Utah, Salt Lake City, Utah, USA.
Akash BhattacharyaDepartment of Biochemistry and Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Daria M DawidziakDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
Marcin D RoganowiczDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
Yueping WanDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
Ruth A PumroyDepartment of Biochemistry, University of Utah, Salt Lake City, Utah, USA.
Borries DemelerDepartment of Biochemistry and Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Dmitri N IvanovDepartment of Biochemistry and Cancer Therapy and Research Center, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA.
Barbie K Ganser-PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA.
Wesley I SundquistDepartment of Biochemistry, University of Utah, Salt Lake City, Utah, USA.
Owen PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, Virginia, USA opornillos@virginia.edu.ORCID https://orcid.org/0000-0001-9056-5002
University of Virginia · USThe University of Texas Health Science Center at San Antonio · USUniversity of Utah · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Structural Virology of Tripartite Motif ProteinsR01GM112508 · NIGMS · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2014 to 2018
$1.6M
Structural and Functional Integration of TRIM5alpha Domains for HIV Capsid BindingF32GM115007 · NIGMS · UNIVERSITY OF VIRGINIA · PI WAGNER, JONATHAN MARK · 2015 to 2017
$173k
NIGMS NIH HHS F32 GM115007NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM112508
6 · The paper itself

Abstract

Restriction factors are intrinsic cellular defense proteins that have evolved to block microbial infections. Retroviruses such as HIV-1 are restricted by TRIM5 proteins, which recognize the viral capsid shell that surrounds, organizes, and protects the viral genome. TRIM5α uses a SPRY domain to bind capsids with low intrinsic affinity (

Indexed as

Amino Acid SequenceAnimalsAntiviral Restriction FactorsAotidaeCapsidCapsid ProteinsCarrier ProteinsHeLa CellsHIV-1HumansMacaca mulattaProtein DomainsProtein MultimerizationProteinsTripartite Motif ProteinsUbiquitin-Protein LigasesAntiviral Restriction FactorsCapsid ProteinsCarrier ProteinsProteinsTRIM5(alpha) protein, rhesus monkeyTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligasespattern recognitionrestriction factorretrovirus

Identifiers

PMID29187540
PMCPMC5790955
OpenAlexW2770989565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.