Evidence map›Paper›PMID 29187315›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2018

Molecular characterization of a human G20P[28] rotavirus a strain with multiple genes related to bat rotaviruses.

Mathew D Esona, Sunando Roy, Kunchala Rungsrisuriyachai, Rashi Gautam, Sandra Hermelijn, Gloria Rey-Benito, Michael D Bowen

Open access · greenAbstract read
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  4. Review
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  6. Article
  7. Whole GenomeVaccines · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Identification of group A rotaviruses from Zambian fruit bats provides evidence for long-distance dispersal events in Africa.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Mathew D EsonaCenters for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA 30333, USA. Electronic address: mdi4@cdc.gov.
Sunando RoyDivision of Infection and Immunity, University College of London, London, UK.
Kunchala RungsrisuriyachaiRoche Sequencing Solutions, Inc., 4155 Hopyard Rd, Suite 200, Pleasanton, CA 94588, USA.
Rashi GautamIHRC Inc, Contracting Agency to the Division of Viral Diseases, Centers for Diseases Control and Prevention, Atlanta, GA 30333, USA.
Sandra HermelijnArts microbioloog, Academisch Ziekenhuis, Paramaribo, Suriname.
Gloria Rey-BenitoPan American Health Organization, Washington, DC, USA.
Michael D BowenCenters for Disease Control and Prevention, 1600 Clifton Rd. NE, Atlanta, GA 30333, USA.
Centers for Disease Control and Prevention · USAcademic Hospital Paramaribo · SRLa Roche College · USUniversity College London · GBWorld Health Organization Regional Office for the Americas · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

Group A rotaviruses are the major cause of severe gastroenteritis in the young of mammals and birds. This report describes characterization of an unusual G20P[28] rotavirus strain detected in a 24month old child from Suriname. Genomic sequence analyses revealed that the genotype constellation of the Suriname strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] was G20-P[28]-I13-R13-C13-M12-A23-N13-T15-E20-H15. Genes VP1, VP2, VP3, NSP1, NSP2, NSP3, NSP4 and NSP5 were recently assigned novel genotypes by the Rotavirus Classification Working Group (RCWG). Three of the 11 gene segments (VP7, VP4, VP6) were similar to cognate gene sequences of bat-like human rotavirus strain Ecu534 from Ecuador and the VP7, NSP3 and NSP5 gene segments of strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] were found to be closely related to gene sequences of bat rotavirus strain 3081/BRA detected in Brazil. Although distantly related, the VP1 gene of the study strain and bat strain BatLi09 detected in Cameroon in 2014 are monophyletic. The NSP1 gene was found to be most closely related to human strain QUI-35-F5 from Brazil. These findings suggest that strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] represents a zoonotic infection from a bat host.

Indexed as

AnimalsChild, PreschoolChiropteraFemaleGenome, ViralGenotypeHumansMultilocus Sequence TypingOpen Reading FramesPhylogenyRotavirusRotavirus InfectionsSequence Analysis, DNAG20P[28]Novel genotypesRotavirusSuriname

Identifiers

PMID29187315
PMCPMC5818710
OpenAlexW2768752422

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.