ArticleBiology direct2017
COGcollator: a web server for analysis of distant relationships between homologous protein families.
Article in Biology direct, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Article
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- From sequence to signature: Machine learning uncovers multiscale feature landscapes that predict AMR across ESKAPE pathogens.bioRxiv : the preprint server for biology · 2025Article
- Origin of the RNA World in Cold Hadean Geothermal Fields Enriched in Zinc and Potassium: Abiogenesis as a Positive Fallout from the Moon-Forming Impact?Life (Basel, Switzerland) · 2025Article
- The Leptospira interrogans proteome's response to zinc highlights the potential involvement of this metal in translational-machinery and virulence.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024Article
- Common Mechanism of Activated Catalysis in P-loop Fold Nucleoside Triphosphatases-United in Diversity.Biomolecules · 2022Article
- Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes.Nucleic acids research · 2021Article
- Chained Structure of Dimeric FmBio · 2021Article
- Profiling Signal Transduction in Global Marine Biofilms.Frontiers in microbiology · 2021Article
- A Novel Genus of Actinobacterial Tectiviridae.Viruses · 2019Article
- COGNAT: a web server for comparative analysis of genomic neighborhoods.Biology direct · 2017Article
- Article
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Authors and funding
5 authors.
Funding
Abstract
backgroundThe Clusters of Orthologous Groups (COGs) of proteins systematize evolutionary related proteins into specific groups with similar functions. However, the available databases do not provide means to assess the extent of similarity between the COGs.
aimWe intended to provide a method for identification and visualization of evolutionary relationships between the COGs, as well as a respective web server.
resultsHere we introduce the COGcollator, a web tool for identification of evolutionarily related COGs and their further analysis. We demonstrate the utility of this tool by identifying the COGs that contain distant homologs of (i) the catalytic subunit of bacterial rotary membrane ATP synthases and (ii) the DNA/RNA helicases of the superfamily 1. REVIEWERS: This article was reviewed by Drs. Igor N. Berezovsky, Igor Zhulin and Yuri Wolf.
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