ArticleBioinformatics (Oxford, England)2018
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
Article in Bioinformatics (Oxford, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
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- Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning.Scientific reports · 2022Article
- SALARECON connects the Atlantic salmon genome to growth and feed efficiency.PLoS computational biology · 2022Article
- Assembly and Comparison ofMicroorganisms · 2022Article
- Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate ReducerFrontiers in microbiology · 2022Review
- Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains.BMC genomics · 2021Article
- A chromosome-level assembly of the black tiger shrimp (Penaeus monodon) genome facilitates the identification of growth-associated genes.Molecular ecology resources · 2021Article
- Sharing Biomedical Data: Strengthening AI Development in Healthcare.Healthcare (Basel, Switzerland) · 2021Article
- Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome.Microbial biotechnology · 2021Article
- Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.BMC genomics · 2021Article
- A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration.BMC microbiology · 2021Article
- Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production.Biotechnology for biofuels · 2021Article
- Influence of Ultra-Processed Foods Consumption on Redox Status and Inflammatory Signaling in Young Celiac Patients.Nutrients · 2021Article
- Designing a novel mRNA vaccine against SARS-CoV-2: An immunoinformatics approach.International journal of biological macromolecules · 2020Article
- Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species.BMC genomics · 2020Article
- FAM83A as a Potential Biological Marker Is Regulated by miR-206 to Promote Cervical Cancer Progression Through PI3K/AKT/mTOR Pathway.Frontiers in medicine · 2020Article
- Metabolic shift induced by synthetic co-cultivation promotes high yield of chain elongated acids from syngas.Scientific reports · 2019Article
- The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.Scientific data · 2019Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Summary: To unlock the full potential of genome data and to enhance data interoperability and reusability of genome annotations we have developed SAPP, a Semantic Annotation Platform with Provenance. SAPP is designed as an infrastructure supporting FAIR de novo computational genomics but can also be used to process and analyze existing genome annotations. SAPP automatically predicts, tracks and stores structural and functional annotations and associated dataset- and element-wise provenance in a Linked Data format, thereby enabling information mining and retrieval with Semantic Web technologies. This greatly reduces the administrative burden of handling multiple analysis tools and versions thereof and facilitates multi-level large scale comparative analysis. Availability and implementation: SAPP is written in JAVA and freely available at https://gitlab.com/sapp and runs on Unix-like operating systems. The documentation, examples and a tutorial are available at https://sapp.gitlab.io. Contact: jasperkoehorst@gmail.com or peter.schaap@wur.nl.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.