Evidence map›Paper›PMID 29185236›Full record

ArticleDrug safety2018

An Automated System Combining Safety Signal Detection and Prioritization from Healthcare Databases: A Pilot Study.

Mickael Arnaud, Bernard Bégaud, Frantz Thiessard, Quentin Jarrion, Julien Bezin, Antoine Pariente, Francesco Salvo

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In one paragraph

Article in Drug safety, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mickael ArnaudUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France.ORCID http://orcid.org/0000-0002-9584-7911
Bernard BégaudUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France.
Frantz ThiessardUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, ERIAS Team, UMR 1219, 33000, Bordeaux, France.
Quentin JarrionUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France.
Julien BezinUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France.
Antoine ParienteUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France.
Francesco SalvoUniversity of Bordeaux, Inserm, Bordeaux Population Health Research Center, Pharmacoepidemiology Team, UMR 1219, 146 Rue Léo Saignat, BP 36, 33000, Bordeaux Cedex, France. francesco.salvo@u-bordeaux.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionSignal detection from healthcare databases is possible, but is not yet used for routine surveillance of drug safety. One challenge is to develop methods for selecting signals that should be assessed with priority.

aimThe aim of this study was to develop an automated system combining safety signal detection and prioritization from healthcare databases and applicable to drugs used in chronic diseases.

methodsPatients present in the French EGB healthcare database for at least 1 year between 2005 and 2015 were considered. Noninsulin glucose-lowering drugs (NIGLDs) were selected as a case study, and hospitalization data were used to select important medical events (IME). Signal detection was performed quarterly from 2008 to 2015 using sequence symmetry analysis. NIGLD/IME associations were screened if one or more exposed case was identified in the quarter, and three or more exposed cases were identified in the population at the date of screening. Detected signals were prioritized using the Longitudinal-SNIP (L-SNIP) algorithm based on strength (S), novelty (N), and potential impact of signal (I), and pattern of drug use (P). Signals scored in the top 10% were identified as of high priority. A reference set was built based on NIGLD summaries of product characteristics (SPCs) to compute the performance of the developed system.

resultsA total of 815 associations were screened and 241 (29.6%) were detected as signals; among these, 58 (24.1%) were prioritized. The performance for signal detection was sensitivity = 47%; specificity = 80%; positive predictive value (PPV) 33%; negative predictive value = 82%. The use of the L-SNIP algorithm increased the early identification of positive controls, restricted to those mentioned in the SPCs after 2008: PPV = 100% versus PPV = 14% with its non-use. The system revealed a strong new signal with dipeptidylpeptidase-4 inhibitors and venous thromboembolism.

conclusionThe developed system seems promising for the routine use of healthcare data for safety surveillance of drugs used in chronic diseases.

Indexed as

Adverse Drug Reaction Reporting SystemsAlgorithmsDatabases, FactualDelivery of Health CareDrug-Related Side Effects and Adverse ReactionsElectronic Health RecordsHumansPharmacovigilancePilot Projects

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.