Evidence map›Paper›PMID 29184974›Full record

ArticleArchives of microbiology2018

Virus-induced apoptosis and phosphorylation form of metacaspase in the marine coccolithophorid Emiliania huxleyi.

Jingwen Liu, Weicong Cai, Xian Fang, Xueting Wang, Guiling Li

Abstract read
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In one paragraph

Article in Archives of microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jingwen LiuCollege of Food and Bioengineering, JiMei University, No. 43, Jiyuan Road, Xiamen, Fujian Province, 361021, China. ljwsbch@163.com.
Weicong CaiCollege of Food and Bioengineering, JiMei University, No. 43, Jiyuan Road, Xiamen, Fujian Province, 361021, China.
Xian FangCollege of Food and Bioengineering, JiMei University, No. 43, Jiyuan Road, Xiamen, Fujian Province, 361021, China.
Xueting WangCollege of Food and Bioengineering, JiMei University, No. 43, Jiyuan Road, Xiamen, Fujian Province, 361021, China.
Guiling LiCollege of Food and Bioengineering, JiMei University, No. 43, Jiyuan Road, Xiamen, Fujian Province, 361021, China.
Jimei University · CN

Funding

Funds of China Southern Oceanographic Research Center 14GZP71NF35National Natural Science Foundation of China (NSFC) 41576166The Key Science and Technology Project of Fujian Province, China 2015Y0039
6 · The paper itself

Abstract

Lytic viral infection and programmed cell death (PCD) are thought to represent two distinct death mechanisms in phytoplankton, unicellular photoautotrophs that drift with ocean currents. PCD (apoptosis) is mainly brought about by the activation of caspases, a protease family with unique substrate selectivity. Here, we demonstrated that virus infection induced apoptosis of marine coccolithophorid Emiliania huxleyi BOF92 involving activation of metacaspase. E. huxleyi cells exhibited cell death process akin to that of apoptosis when exposed to virus infection. We observed typical hallmarks of apoptosis including cell shrinkage, associated nuclear morphological changes and DNA fragmentation. Immunoblotting revealed that antibody against human active-caspase-3 shared epitopes with a protein of ≈ 23 kDa; whose pattern of expression correlated with the onset of cell death. Moreover, analysis on two-dimensional gel electrophoresis revealed that two spots of active caspase-3 co-migrated with the different isoelectric points. Phosphatase treatment of cytosolic extracts containing active caspases-3 showed a mobility shift, suggesting that phosphorylated form of this enzyme might be present in the extracts. Computational prediction of phosphorylation sites based on the amino acid sequence of E. huxleyi metacaspase showed multiple phosphorylated sites for serine, threonine and tyrosine residues. This is the first report showing that phosphorylation modification of metacaspase in E. huxleyi might be required for certain biochemical and morphological changes during virus induced apoptosis.

Indexed as

ApoptosisAmino Acid SequenceCaspasesConserved SequenceDNA FragmentationGene ExpressionGiant VirusesHaptophytaPhosphorylationPhytoplanktonProtein Processing, Post-TranslationalCaspasesApoptosisCoccolithovirusEmiliania huxleyiMetacaspasePhosphorylation

Identifiers

PMID29184974
OpenAlexW2768564627

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.