Evidence map›Paper›PMID 29184206›Full record

ArticleNature neuroscience2017

A multiregional proteomic survey of the postnatal human brain.

Becky C Carlyle, Robert R Kitchen, Jean E Kanyo, Edward Z Voss, Mihovil Pletikos, André M M Sousa, TuKiet T Lam, Mark B Gerstein, Nenad Sestan, Angus C Nairn

Abstract read
In one paragraph

Article in Nature neuroscience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
7.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 159 citations in OpenAlex.

  1. Trial
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  14. ApoE3 Christchurch and tau interaction as a protective mechanism against Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
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  18. Review
  19. Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Becky C CarlyleDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA.
Robert R KitchenDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1443-8559
Jean E KanyoW.M. Keck Biotechnology Resource Laboratory, Yale School of Medicine, New Haven, CT, USA.
Edward Z VossW.M. Keck Biotechnology Resource Laboratory, Yale School of Medicine, New Haven, CT, USA.
Mihovil PletikosDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.
André M M SousaDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-1740-5066
TuKiet T LamDepartment of Molecular Biophysics & Biochemistry, Yale School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-4850-3462
Mark B GersteinDepartment of Molecular Biophysics & Biochemistry, Yale School of Medicine, New Haven, CT, USA.
Nenad SestanDepartment of Neuroscience and Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT, USA. nenad.sestan@yale.edu.ORCID http://orcid.org/0000-0003-0966-9619
Angus C NairnDepartment of Psychiatry, Yale School of Medicine, New Haven, CT, USA. angus.nairn@yale.edu.ORCID http://orcid.org/0000-0002-7075-0195
Yale University · USW. M. Keck Foundation · US

Funding

Yale/NIDA Neuroproteomics Research CenterP30DA018343 · NIDA · YALE UNIVERSITY · PI Marina R Picciotto · 2004 to 2026
$37.1M
Yale Alzheimer Disease Research CenterP50AG047270 · NIA · YALE UNIVERSITY · PI STRITTMATTER, STEPHEN M · 2015 to 2019
$8.3M
Functional Genomics of Human Brain DevelopmentP50MH106934 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2014 to 2019
$7.9M
Cis-Regulatory Epigenome Mappings in SchizophreniaU01MH103392 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, SKLAR, PAMELA · 2014 to 2017
$7.6M
Transcriptional and Epigenetic Signatures of Human Brain Development and AutismU01MH103339 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD, STATE, MATTHEW W. · 2014 to 2017
$6.5M
Genetic variants affect brain gene expression and risks of psychiatric disordersU01MH103340 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU, RZHETSKY, ANDREY · 2014 to 2017
$4.3M
1/3 Integrative Genomic Analysis of Human Brain Development and AutismR01MH110926 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2016 to 2019
$3.2M
RNA Sequencing of the Limbic System in Bipolar DisorderR01MH105898 · NIMH · JOHNS HOPKINS UNIVERSITY · PI HYDE, THOMAS MICHAEL, ZANDI, PETER P. · 2015 to 2018
$3.1M
Decoding schizophrenia-From GWAS to functional regulatory variantsR01MH105472 · NIMH · DUKE UNIVERSITY · PI CRAWFORD, GREGORY E, SULLIVAN, PATRICK F · 2014 to 2017
$2.9M
Epigenetic and Transcriptional Dysregulation in Autism Spectrum DisorderR01MH094714 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2011 to 2015
$2.8M
Gene regulatory elements and transcriptome in iPSCs and embryonic human cortexU01MH103365 · NIMH · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, VACCARINO, FLORA M · 2014 to 2017
$2.4M
The USC PsychENCODE ProjectU01MH103346 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FARNHAM, PEGGY J, KNOWLES, JAMES A · 2014 to 2017
$2.4M
NIA NIH HHS P50 AG047270NIDA NIH HHS P30 DA018343NIH HHS S10 OD018034NIH HHS S10 OD019967NIMH NIH HHS P50 MH106934NIMH NIH HHS R01 MH094714NIMH NIH HHS R01 MH105472NIMH NIH HHS R01 MH105898NIMH NIH HHS R01 MH110926NIMH NIH HHS R21 MH102791NIMH NIH HHS R21 MH103877NIMH NIH HHS R21 MH105881NIMH NIH HHS U01 MH103339NIMH NIH HHS U01 MH103340NIMH NIH HHS U01 MH103346NIMH NIH HHS U01 MH103365NIMH NIH HHS U01 MH103392
6 · The paper itself

Abstract

Detailed observations of transcriptional, translational and post-translational events in the human brain are essential to improving our understanding of its development, function and vulnerability to disease. Here, we exploited label-free quantitative tandem mass-spectrometry to create an in-depth proteomic survey of regions of the postnatal human brain, ranging in age from early infancy to adulthood. Integration of protein data with existing matched whole-transcriptome sequencing (RNA-seq) from the BrainSpan project revealed varied patterns of protein-RNA relationships, with generally increased magnitudes of protein abundance differences between brain regions compared to RNA. Many of the differences amplified in protein data were reflective of cytoarchitectural and functional variation between brain regions. Comparing structurally similar cortical regions revealed significant differences in the abundances of receptor-associated and resident plasma membrane proteins that were not readily observed in the RNA expression data.

Indexed as

AdolescentAdultAgingAnimalsAnimals, NewbornBrain ChemistryChildChild, PreschoolGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansInfantInfant, NewbornMicePeptide LibraryProteomicsPeptide LibraryRNARNA, Messenger

Identifiers

PMID29184206
PMCPMC5894337
OpenAlexW2767910296

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.