Evidence map›Paper›PMID 29184159›Full record

ArticleScientific reports2017

Cell-free protein synthesis from non-growing, stressed Escherichia coli.

Jurek Failmezger, Michael Rauter, Robert Nitschel, Michael Kraml, Martin Siemann-Herzberg

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Establishing a Cell-Free Transcription-Translation Platform forACS biomaterials science & engineering · 2023
    Article
  5. What remains from living cells in bacterial lysate-based cell-free systems.Computational and structural biotechnology journal · 2023
    Review
  6. Systems biology-based analysis of cell-free systems.Current opinion in biotechnology · 2022
    Review
  7. Ribosome purification fromBiotechnology notes (Amsterdam, Netherlands) · 2022
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Methods to reduce variability inSynthetic and systems biotechnology · 2019
    Article
  17. Article
  18. Article
  19. Cell-Free Protein Synthesis From Fast-GrowingFrontiers in microbiology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jurek FailmezgerInstitute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany.
Michael RauterInstitute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany.
Robert NitschelInstitute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany.
Michael KramlInstitute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany.
Martin Siemann-HerzbergInstitute of Biochemical Engineering, University of Stuttgart, Stuttgart, Germany. siemann@ibvt.uni-stuttgart.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell-free protein synthesis is a versatile protein production system. Performance of the protein synthesis depends on highly active cytoplasmic extracts. Extracts from E. coli are believed to work best; they are routinely obtained from exponential growing cells, aiming to capture the most active translation system. Here, we report an active cell-free protein synthesis system derived from cells harvested at non-growth, stressed conditions. We found a downshift of ribosomes and proteins. However, a characterization revealed that the stoichiometry of ribosomes and key translation factors was conserved, pointing to a fully intact translation system. This was emphasized by synthesis rates, which were comparable to those of systems obtained from fast-growing cells. Our approach is less laborious than traditional extract preparation methods and multiplies the yield of extract per cultivation. This simplified growth protocol has the potential to attract new entrants to cell-free protein synthesis and to broaden the pool of applications. In this respect, a translation system originating from heat stressed, non-growing E. coli enabled an extension of endogenous transcription units. This was demonstrated by the sigma factor depending activation of parallel transcription. Our cell-free expression platform adds to the existing versatility of cell-free translation systems and presents a tool for cell-free biology.

Indexed as

Cell-Free SystemProtein BiosynthesisStress, PhysiologicalBiomassEscherichia coliGene Expression Regulation, BacterialGenes, rRNAModels, BiologicalPolyribosomesRibosomes

Identifiers

PMID29184159
PMCPMC5705671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.