Evidence map›Paper›PMID 29184087›Full record

ArticleScientific reports2017

A half-site multimeric enzyme achieves its cooperativity without conformational changes.

Mirella Vivoli, Jiayun Pang, Nicholas J Harmer

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  6. Intersubunit Coupling Enables Fast COACS central science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Mirella VivoliDepartment of Biosciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK.
Jiayun PangDepartment of Pharmaceutical, Chemical and Environmental Sciences, Faculty of Engineering and Science,University of Greenwich, Medway Campus, Central Avenue, Chatham Maritime, Kent, ME4 4TB, UK.
Nicholas J HarmerDepartment of Biosciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK. N.J.Harmer@exeter.ac.uk.ORCID 0000-0002-4073-0505
University of Exeter · GBUniversity of Greenwich · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H019685/1
6 · The paper itself

Abstract

Cooperativity is a feature many multimeric proteins use to control activity. Here we show that the bacterial heptose isomerase GmhA displays homotropic positive and negative cooperativity among its four protomers. Most similar proteins achieve this through conformational changes: GmhA instead employs a delicate network of hydrogen bonds, and couples pairs of active sites controlled by a unique water channel. This network apparently raises the Lewis acidity of the catalytic zinc, thus increasing the activity at one active site at the cost of preventing substrate from adopting a reactive conformation at the paired negatively cooperative site - a "half-site" behavior. Our study establishes the principle that multimeric enzymes can exploit this cooperativity without conformational changes to maximize their catalytic power and control. More broadly, this subtlety by which enzymes regulate functions could be used to explore new inhibitor design strategies.

Indexed as

Models, MolecularProtein ConformationProtein MultimerizationBinding SitesCatalytic DomainEnzyme ActivationEnzymesHydrogen BondingMutationProtein BindingQuantum TheoryStructure-Activity RelationshipSubstrate SpecificityEnzymes

Identifiers

PMID29184087
PMCPMC5705639
OpenAlexW2769429829

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.