Evidence map›Paper›PMID 29184002›Full record

ArticleThe Journal of biological chemistry2018

A guanine nucleotide exchange factor (GEF) limits Rab GTPase-driven membrane fusion.

Lars Langemeyer, Angela Perz, Daniel Kümmel, Christian Ungermann

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Structural basis for Rab6 activation by the Ric1-Rgp1 complex.bioRxiv : the preprint server for biology · 2024
    Article
  4. Article
  5. Review
  6. Regulatory sites in the Mon1-Ccz1 complex control Rab5 to Rab7 transition and endosome maturation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Crystal structure of the GDP-bound GTPase domain of Rab5a from Leishmania donovani.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Stochastic activation and bistability in a Rab GTPase regulatory network.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 3 countries.

Lars LangemeyerFrom the Biochemistry Section and.
Angela PerzFrom the Biochemistry Section and.
Daniel KümmelStructural Biochemistry, Department of Biology/Chemistry, University of Osnabrück, Barbarastrasse 13, 49076 Osnabrück, Germany.
Christian UngermannFrom the Biochemistry Section and cu@uos.de.ORCID 0000-0003-4331-8695
Osnabrück University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identity of organelles in the endomembrane system of any eukaryotic cell critically depends on the correctly localized Rab GTPase, which binds effectors and thus promotes membrane remodeling or fusion. However, it is still unresolved which factors are required and therefore define the localization of the correct fusion machinery. Using SNARE-decorated proteoliposomes that cannot fuse on their own, we now demonstrate that full fusion activity can be achieved by just four soluble factors: a soluble SNARE (Vam7), a guanine nucleotide exchange factor (GEF, Mon1-Ccz1), a Rab-GDP dissociation inhibitor (GDI) complex (prenylated Ypt7-GDI), and a Rab effector complex (HOPS). Our findings reveal that the GEF Mon1-Ccz1 is necessary and sufficient for stabilizing prenylated Ypt7 on membranes. HOPS binding to Ypt7-GTP then drives SNARE-mediated fusion, which is fully GTP-dependent. We conclude that an entire fusion cascade can be controlled by a GEF.

Indexed as

EndosomesGuanine Nucleotide Dissociation InhibitorsGuanine Nucleotide Exchange FactorsLysosomesMembrane FusionPrenylationProtein BindingProtein TransportProteolipidsrab GTP-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25Vesicular Transport ProteinsCcz1 protein, S cerevisiaeGuanine Nucleotide Dissociation InhibitorsGuanine Nucleotide Exchange FactorsMon1 protein, S cerevisiaeProteolipidsproteoliposomesrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSynaptosomal-Associated Protein 25VAM7 protein, S cerevisiaeVesicular Transport ProteinsVPS21 protein, S cerevisiaeYPT7 protein, S cerevisiaeendosomeGDIguanine nucleotide exchange factor (GEF)lysosomemembrane fusionMon1-Ccz1, Ypt7, Rab7, GDIRab

Identifiers

PMID29184002
PMCPMC5767875
OpenAlexW2770539102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.