Evidence map›Paper›PMID 29183403›Full record

ArticleGenome medicine2017

Linkage, whole genome sequence, and biological data implicate variants in RAB10 in Alzheimer's disease resilience.

Perry G Ridge, Celeste M Karch, Simon Hsu, Ivan Arano, Craig C Teerlink, Mark T W Ebbert, Josue D Gonzalez Murcia, James M Farnham, Anna R Damato, Mariet Allen and 22 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Genome medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 58 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 2 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 2 syntheses or guidelines pooled it, 95 citations in OpenAlex.

  1. Pooled it
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  9. Genetic analysis of cognitive preservation in the midwestern Amish reveals a novel locus on chromosome 2.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
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  11. Impairment of the Glial Phagolysosomal System Drives Prion-Like Propagation in aThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 8 institutions in 2 countries.

Perry G RidgeDepartment of Biology, Brigham Young University, Provo, UT, 84602, USA.
Celeste M KarchWashington University School of Medicine, St. Louis, MO, 63110, USA.
Simon HsuWashington University School of Medicine, St. Louis, MO, 63110, USA.
Ivan AranoDepartment of Biology, Brigham Young University, Provo, UT, 84602, USA.
Craig C TeerlinkDivision of Genetic Epidemiology, Department of Internal Medicine, University of Utah School of Medicine, Salt Lake City, UT, 84132, USA.
Mark T W EbbertDepartment of Biology, Brigham Young University, Provo, UT, 84602, USA.
Josue D Gonzalez MurciaDepartment of Biology, Brigham Young University, Provo, UT, 84602, USA.
James M FarnhamDivision of Genetic Epidemiology, Department of Internal Medicine, University of Utah School of Medicine, Salt Lake City, UT, 84132, USA.
Anna R DamatoWashington University School of Medicine, St. Louis, MO, 63110, USA.
Mariet AllenDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Xue WangDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Oscar HarariWashington University School of Medicine, St. Louis, MO, 63110, USA.
Victoria M FernandezWashington University School of Medicine, St. Louis, MO, 63110, USA.
Rita GuerreiroDepartment of Molecular Neuroscience, Institute of Neurology, University College London, London, UK.
Jose BrasDepartment of Molecular Neuroscience, Institute of Neurology, University College London, London, UK.
John HardyDepartment of Molecular Neuroscience, Institute of Neurology, University College London, London, UK.
Ronald MungerDepartment of Nutrition, Dietetics, and Food Sciences, Utah State University, Logan, UT, 84322, USA.
Maria NortonDepartment of Family Consumer & Human Development, Utah State University, Logan, UT, 84322, USA.
Celeste SassiDepartment of Molecular Neuroscience, Institute of Neurology, University College London, London, UK.
Andrew SingletonNational Institute on Aging, Bethesda, MD, 21224, USA.
Steven G YounkinDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Todd E GoldeCenter for Translational Research in Neurodegenerative Disease, McKnight Brain Institute, University of Florida, Department of Neuroscience, Gainesville, FL, 32610, USA.
Nathan D PriceInstitute for Systems Biology, 401 Terry Avenue N, Seattle, WA, 98109, USA.
Nilüfer Ertekin-TanerDepartments of Neurology and Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Carlos CruchagaWashington University School of Medicine, St. Louis, MO, 63110, USA.
Alison M GoateDepartments of Neuroscience, Genetics and Genomic Sciences, and Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Christopher CorcoranDepartment of Mathematics and Statistics, Utah State University, Logan, UT, 84322, USA.
JoAnn TschanzDepartment of Psychology, Utah State University, Logan, UT, 84322, USA.
Lisa A Cannon-AlbrightDivision of Genetic Epidemiology, Department of Internal Medicine, University of Utah School of Medicine, Salt Lake City, UT, 84132, USA.
John S K KauweDepartments of Biology and Neuroscience, Brigham Young University, Provo, UT, 84602, USA. kauwe@byu.edu.
Alzheimer’s Disease Neuroimaging Initiative
Brigham Young University · USWashington University in St. Louis · USUtah State University · USInstitute for Systems Biology · USMayo Clinic in Florida · USNational Institute on Aging · USUniversity College London · GBUniversity of Florida · US

Funding

Project 1U19AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI MICHAEL W WEINER · 2016 to 2026
$226.7M
Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
WASHINGTON UNIVERSITY ALZHEIMERS DISEASE RESEARCH CENTERP50AG005681 · NIA · WASHINGTON UNIVERSITY · PI MORRIS, JOHN · 1985 to 2019
$52.1M
VESICULAR LOCALIZATION AND FUNCTION OF PRESENILIN 1 FRAGMENTP50AG005138 · NIA · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SCHIMMING, CORBETT · 1985 to 2019
$37.9M
Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI ALEXANDER, GENE E · 2001 to 2020
$32.5M
Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, PETERS, METTE · 2013 to 2022
$24.6M
University of Florida Older Americans Independence Center (OAIC)P30AG028740 · NIA · UNIVERSITY OF FLORIDA · PI CHRISTIAAN LEEUWENBURGH · 2007 to 2026
$22.8M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
Identification and characterization of AD risk networks using multi-dimensional "omics" dataU01AG052411 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CRUCHAGA, CARLOS, GOATE, ALISON M · 2016 to 2020
$4.5M
RESEARCH EDUCATION PROGRAM ON COMPUTATIONAL AND STATISTICAL TOOL DEVELOPMENT FOR ADDICTION GENETICSR25DA027995 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN, RICE, JOHN P. · 2009 to 2019
$4.3M
NCI NIH HHS P30 CA042014NIA NIH HHS K01 AG046374NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG028740NIA NIH HHS P50 AG005138NIA NIH HHS P50 AG005681NIA NIH HHS R01 AG018712NIA NIH HHS R01 AG032990NIA NIH HHS R01 AG042611NIA NIH HHS RF1 AG051504NIA NIH HHS RF1 AG054052NIA NIH HHS RF1AG054052NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG046139NIA NIH HHS U01 AG052411NIA NIH HHS U01AG052411NIA NIH HHS U19 AG024904NIDA NIH HHS R25 DA027995NIH HHS S10 OD018522NINDS NIH HHS R01 NS080820NINDS NIH HHS R01NS080820NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

backgroundWhile age and the APOE ε4 allele are major risk factors for Alzheimer's disease (AD), a small percentage of individuals with these risk factors exhibit AD resilience by living well beyond 75 years of age without any clinical symptoms of cognitive decline.

methodsWe used over 200 "AD resilient" individuals and an innovative, pedigree-based approach to identify genetic variants that segregate with AD resilience. First, we performed linkage analyses in pedigrees with resilient individuals and a statistical excess of AD deaths. Second, we used whole genome sequences to identify candidate SNPs in significant linkage regions. Third, we replicated SNPs from the linkage peaks that reduced risk for AD in an independent dataset and in a gene-based test. Finally, we experimentally characterized replicated SNPs.

resultsRs142787485 in RAB10 confers significant protection against AD (p value = 0.0184, odds ratio = 0.5853). Moreover, we replicated this association in an independent series of unrelated individuals (p value = 0.028, odds ratio = 0.69) and used a gene-based test to confirm a role for RAB10 variants in modifying AD risk (p value = 0.002). Experimentally, we demonstrated that knockdown of RAB10 resulted in a significant decrease in Aβ42 (p value = 0.0003) and in the Aβ42/Aβ40 ratio (p value = 0.0001) in neuroblastoma cells. We also found that RAB10 expression is significantly elevated in human AD brains (p value = 0.04).

conclusionsOur results suggest that RAB10 could be a promising therapeutic target for AD prevention. In addition, our gene discovery approach can be expanded and adapted to other phenotypes, thus serving as a model for future efforts to identify rare variants for AD and other complex human diseases.

Indexed as

Aged, 80 and overAlzheimer DiseaseAnimalsBrainCell Line, TumorFemaleGene ExpressionGenetic Predisposition to DiseaseHumansMaleMiceMonomeric GTP-Binding ProteinsPolymorphism, Single Nucleotiderab GTP-Binding ProteinsMonomeric GTP-Binding ProteinsRab10 protein, humanrab GTP-Binding ProteinsSAR1A protein, humanAlzheimer’s diseaseLinkage analysesProtective variantsUtah Population DatabaseWhole genome sequencing

Identifiers

PMID29183403
PMCPMC5706401
OpenAlexW2768955389

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.