Evidence map›Paper›PMID 29183402›Full record

ArticleStem cell research & therapy2017

Two sides of the same coin? Unraveling subtle differences between human embryonic and induced pluripotent stem cells by Raman spectroscopy.

Elvira Parrotta, Maria Teresa De Angelis, Stefania Scalise, Patrizio Candeloro, Gianluca Santamaria, Mariagrazia Paonessa, Maria Laura Coluccio, Gerardo Perozziello, Stefania De Vitis, Antonella Sgura and 4 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Stem cell research & therapy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. A single-cell Raman-based platform to identify developmental stages of human pluripotent stem cell-derived neurons.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Elvira ParrottaResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Maria Teresa De AngelisResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Stefania ScaliseResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Patrizio CandeloroBioNEM Lab., Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy. patrizio.candeloro@unicz.it.ORCID http://orcid.org/0000-0001-6156-887X
Gianluca SantamariaResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Mariagrazia PaonessaResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Maria Laura ColuccioBioNEM Lab., Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Gerardo PerozzielloBioNEM Lab., Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Stefania De VitisResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Antonella SguraDepartment of Science, University of Rome "Roma tre", viale G. Marconi 446, 00146, Rome, Italy.
Elisa ColuzziDepartment of Science, University of Rome "Roma tre", viale G. Marconi 446, 00146, Rome, Italy.
Vincenzo MollaceDepartment of Health Sciences, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy.
Enzo Mario Di FabrizioSMILEs Lab., Physical Science and Engineering Division (PSE), KAUST, 23955-6900, Thuwal, Kingdom of Saudi Arabia.
Giovanni CudaResearch Center for Advanced Biochemistry and Molecular Biology, Stem Cell Laboratory, Department of Experimental and Clinical Medicine, University "Magna Graecia" of Catanzaro, 88100 Loc., Germaneto, Catanzaro, Italy. cuda@unicz.it.
Magna Graecia University · ITRoma Tre University · ITKing Abdullah University of Science and Technology · SA

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca PON03PE_0009_2Ministero dell'Istruzione, dell'Università e della Ricerca PON04a3_00433
6 · The paper itself

Abstract

backgroundHuman pluripotent stem cells, including embryonic stem cells and induced pluripotent stem cells, hold enormous promise for many biomedical applications, such as regenerative medicine, drug testing, and disease modeling. Although induced pluripotent stem cells resemble embryonic stem cells both morphologically and functionally, the extent to which these cell lines are truly equivalent, from a molecular point of view, remains controversial.

methodsPrincipal component analysis and K-means cluster analysis of collected Raman spectroscopy data were used for a comparative study of the biochemical fingerprint of human induced pluripotent stem cells and human embryonic stem cells. The Raman spectra analysis results were further validated by conventional biological assays.

resultsRaman spectra analysis revealed that the major difference between human embryonic stem cells and induced pluripotent stem cells is due to the nucleic acid content, as shown by the strong positive peaks at 785, 1098, 1334, 1371, 1484, and 1575 cm

conclusionsHere, we report a nonbiological approach to discriminate human induced pluripotent stem cells from their native embryonic stem cell counterparts.

Indexed as

Spectrum Analysis, RamanBiomarkersCell CycleCell DifferentiationCluster AnalysisDNAFibroblastsGene ExpressionGene Expression ProfilingGenetic VectorsHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsKaryotypingKruppel-Like Factor 4Kruppel-Like Transcription FactorsBiomarkersDNAKruppel-Like Factor 4Kruppel-Like Transcription FactorsMYC protein, humanOctamer Transcription Factor-3POU5F1 protein, humanProto-Oncogene Proteins c-mycRNASOX2 protein, humanSOXB1 Transcription FactorsHuman embryonic stem cellsHuman induced pluripotent stem cellsMultivariate analysisRaman imaging

Identifiers

PMID29183402
PMCPMC5706396
OpenAlexW2768952912

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.