Evidence map›Paper›PMID 29183338›Full record

ArticleBMC research notes2017

Optimization of PCR conditions for amplifying an AT-rich amino acid transporter promoter sequence with high number of tandem repeats from Arabidopsis thaliana.

Pinky Dhatterwal, Sandhya Mehrotra, Rajesh Mehrotra

Abstract read
In one paragraph

Article in BMC research notes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Pinky DhatterwalDepartment of Biological Sciences, Birla Institute of Technology & Sciences, Pilani, Rajasthan, 333031, India.
Sandhya MehrotraDepartment of Biological Sciences, Birla Institute of Technology & Sciences, Pilani, Rajasthan, 333031, India. sandhya@pilani.bits-pilani.ac.in.
Rajesh MehrotraDepartment of Biological Sciences, Birla Institute of Technology & Sciences, Pilani, Rajasthan, 333031, India. rmehrotra@pilani.bits-pilani.ac.in.

Funding

Department of Science and technology, Government of India EMR/2016/002470
6 · The paper itself

Abstract

objectiveThe aim of the present study is to optimize the PCR conditions required to amplify the promoter sequence of an amino acid transporter having an AT-rich base composition with a high number of tandem repeats.

resultResults show that successful amplification can be achieved by performing a 2-step PCR at a lower extension temperature of 65 °C for an increased extension period of 1.5 min/kb, with MgCl

Indexed as

Promoter Regions, GeneticTandem Repeat SequencesAdenineAmino Acid Transport SystemsArabidopsisArabidopsis ProteinsGenes, PlantPolymerase Chain ReactionThymineAdenineAmino Acid Transport SystemsArabidopsis ProteinsThymineAT-richExtensionOptimizationPCRTandem repeats

Identifiers

PMID29183338
PMCPMC5706289

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.