Evidence map›Paper›PMID 29180807›Full record

ArticleNature immunology2018

Viral unmasking of cellular 5S rRNA pseudogene transcripts induces RIG-I-mediated immunity.

Jessica J Chiang, Konstantin M J Sparrer, Michiel van Gent, Charlotte Lässig, Teng Huang, Nikolaus Osterrieder, Karl-Peter Hopfner, Michaela U Gack

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed, 253 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. YBX1 regulates RNA polymerase III transcripts to prevent inflammation.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Inherited human TFIIIA deficiency disrupts T cell development.medRxiv : the preprint server for health sciences · 2026
    Article
  7. Article
  8. Regulation of antiviral and antitumor immunity by theProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Defective RNA Polymerase III sensing of mitochondrial DNA in pulmonary epithelial cells impairs type I IFN immunity to SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Review
  11. Y-box binding proteins in immunity and RNA virus infection.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Viral effectors trigger innate immunity across the tree of life.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Review

121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Jessica J ChiangDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, USA.
Konstantin M J SparrerDepartment of Microbiology, The University of Chicago, Chicago, IL, USA.
Michiel van GentDepartment of Microbiology, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-3798-5360
Charlotte LässigGene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Teng HuangInstitut für Virologie, Freie Universität Berlin, Berlin, Germany.
Nikolaus OsterriederInstitut für Virologie, Freie Universität Berlin, Berlin, Germany.
Karl-Peter HopfnerGene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.
Michaela U GackDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, USA. mgack@uchicago.edu.ORCID http://orcid.org/0000-0002-2163-2598
Freie Universität Berlin · DEHarvard University · USUniversity of Chicago · USCenter for Integrated Protein Science Munich · DELudwig-Maximilians-Universität München · DE

Funding

Regulation of Host Innate Immunity Against Viral InfectionR01AI087846 · NIAID · UNIVERSITY OF CHICAGO · PI GACK, MICHAELA ULRIKE · 2010 to 2020
$3.9M
Novel innate immune sensing mechanisms of intracellular RNAR21AI133361 · NIAID · UNIVERSITY OF CHICAGO · PI GACK, MICHAELA ULRIKE · 2017 to 2018
$445k
NIAID NIH HHS R01 AI087846NIAID NIH HHS R21 AI133361
6 · The paper itself

Abstract

The sensor RIG-I detects double-stranded RNA derived from RNA viruses. Although RIG-I is also known to have a role in the antiviral response to DNA viruses, physiological RNA species recognized by RIG-I during infection with a DNA virus are largely unknown. Using next-generation RNA sequencing (RNAseq), we found that host-derived RNAs, most prominently 5S ribosomal RNA pseudogene 141 (RNA5SP141), bound to RIG-I during infection with herpes simplex virus 1 (HSV-1). Infection with HSV-1 induced relocalization of RNA5SP141 from the nucleus to the cytoplasm, and virus-induced shutoff of host protein synthesis downregulated the abundance of RNA5SP141-interacting proteins, which allowed RNA5SP141 to bind RIG-I and induce the expression of type I interferons. Silencing of RNA5SP141 strongly dampened the antiviral response to HSV-1 and the related virus Epstein-Barr virus (EBV), as well as influenza A virus (IAV). Our findings reveal that antiviral immunity can be triggered by host RNAs that are unshielded following depletion of their respective binding proteins by the virus.

Indexed as

AnimalsCells, CulturedChlorocebus aethiopsDEAD Box Protein 58Gene ExpressionHEK293 CellsHerpesvirus 1, HumanHost-Pathogen InteractionsHumansImmunityInterferon Type IMice, KnockoutPseudogenesReceptors, ImmunologicRNA, Ribosomal, 5SRNA TransportDEAD Box Protein 58Interferon Type IReceptors, ImmunologicRIGI protein, humanRNA, Ribosomal, 5S

Identifiers

PMID29180807
PMCPMC5815369
OpenAlexW2770844838

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.