Evidence map›Paper›PMID 29180749›Full record

ArticleScientific reports2017

Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus.

Shuhei Sakakibara, Takao Arimori, Kazuo Yamashita, Hideyuki Jinzai, Daisuke Motooka, Shota Nakamura, Songling Li, Kazuya Takeda, Jun Katayama, Marwa Ali El Hussien and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  8. B-Cell Receptor Repertoire: Recent Advances in Autoimmune Diseases.Clinical reviews in allergy & immunology · 2024
    Review
  9. Article
  10. Recent Progress in Antibody Epitope Prediction.Antibodies (Basel, Switzerland) · 2023
    Review
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Shuhei SakakibaraLaboratory of Immune Regulation, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan. sakakibara@ifrec.osaka-u.ac.jp.
Takao ArimoriLaboratory of Protein Synthesis and Expression, Institute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-6063-5572
Kazuo YamashitaLaboratory of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Hideyuki JinzaiGraduate School of Medicine, Osaka University, Suita, Osaka, 565-0871, Japan.
Daisuke MotookaDepartment of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka, 565-0871, Japan.
Shota NakamuraDepartment of Infection Metagenomics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka, 565-0871, Japan.
Songling LiLaboratory of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Kazuya TakedaLaboratory of Immune Regulation, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Jun KatayamaLaboratory of Immune Regulation, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Marwa Ali El HussienLaboratory of Immune Regulation, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.ORCID 0000-0001-7740-1505
Masashi NarazakiLaboratory of Immunopathology, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Toshio TanakaLaboratory of Immunopathology, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Daron M StandleyLaboratory of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan.
Junichi TakagiLaboratory of Protein Synthesis and Expression, Institute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.
Hitoshi KikutaniLaboratory of Immune Regulation, Immunology Frontier Research Center, Osaka University, Suita, Osaka, 565-0871, Japan. kikutani@biken.osaka-u.ac.jp.
The University of Osaka · JPProtein Research Foundation · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolutional process of disease-associated autoantibodies in systemic lupus erythematosus (SLE) remains to be established. Here we show intraclonal diversification and affinity maturation of anti-nuclear antibody (ANA)-producing B cells in SLE. We identified a panel of monoclonal ANAs recognizing nuclear antigens, such as double-stranded DNA (dsDNA) and ribonucleoproteins (RNPs) from acute SLE subjects. These ANAs had relatively few, but nonetheless critical mutations. High-throughput immunoglobulin sequencing of blood lymphocytes disclosed the existence of sizable ANA lineages shearing critical mutations intraclonally. We further focused on anti-DNA antibodies, which are capable to bind to both single-stranded (ss) and dsDNA at high affinity. Crystal structure and biochemical analysis confirmed a direct role of the mutations in the acquisition of DNA reactivity and also revealed that these anti-DNA antibodies recognized an unpaired region within DNA duplex. Our study unveils the unique properties of high-affinity anti-DNA antibodies that are generated through antigen-driven affinity maturation in acute phase of SLE.

Indexed as

Acute DiseaseAmino Acid SequenceAntibodies, AntinuclearAntigensAutoantibodiesClonal EvolutionDNAHEK293 CellsHumansLupus Erythematosus, SystemicMutationMutation RatePhylogenySyndecan-1Antibodies, AntinuclearAntigensAutoantibodiesDNASyndecan-1

Identifiers

PMID29180749
PMCPMC5703881
OpenAlexW2768689218

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.